Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 AC093525.10-201ENST00000625130 1569 ntBASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PPP4R4Q6NUP7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 PTBP1P-201ENST00000554374 1601 ntBASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 KRT8P17-201ENST00000453110 1448 ntBASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.23■□□□□ 0.51
PPP4R4Q6NUP7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 Z98044.1-201ENST00000632503 1764 ntBASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 AC073210.2-201ENST00000430369 194 ntBASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 AC083880.1-201ENST00000608266 535 ntBASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 KRT16P6-202ENST00000425692 1426 ntBASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PPP4R4Q6NUP7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PPP4R4Q6NUP7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms