Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL662844.1-201ENST00000546340 181 ntBASIC18.97■□□□□ 0.63
CXCL12P48061 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.97■□□□□ 0.63
CXCL12P48061 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CXCL12P48061 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.96■□□□□ 0.63
CXCL12P48061 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 RNF126P1-202ENST00000569893 925 ntBASIC18.96■□□□□ 0.63
CXCL12P48061 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CXCL12P48061 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.96■□□□□ 0.63
CXCL12P48061 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CXCL12P48061 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.96■□□□□ 0.63
CXCL12P48061 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CXCL12P48061 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.96■□□□□ 0.63
CXCL12P48061 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 ZNF815P-204ENST00000434898 1737 ntBASIC18.96■□□□□ 0.63
CXCL12P48061 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CXCL12P48061 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CXCL12P48061 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CXCL12P48061 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.95■□□□□ 0.62
CXCL12P48061 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.95■□□□□ 0.62
CXCL12P48061 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.95■□□□□ 0.62
CXCL12P48061 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
CXCL12P48061 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.95■□□□□ 0.62
CXCL12P48061 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.95■□□□□ 0.62
CXCL12P48061 AC104819.1-201ENST00000504587 486 ntBASIC18.95■□□□□ 0.62
CXCL12P48061 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.95■□□□□ 0.62
CXCL12P48061 AC106795.1-205ENST00000512851 1056 ntBASIC18.95■□□□□ 0.62
CXCL12P48061 AP002469.2-201ENST00000531724 424 ntBASIC18.95■□□□□ 0.62
CXCL12P48061 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.95■□□□□ 0.62
CXCL12P48061 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.95■□□□□ 0.62
CXCL12P48061 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.95■□□□□ 0.62
CXCL12P48061 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.95■□□□□ 0.62
CXCL12P48061 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CXCL12P48061 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CXCL12P48061 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CXCL12P48061 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 AP000593.1-201ENST00000393668 712 ntBASIC18.94■□□□□ 0.62
CXCL12P48061 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CXCL12P48061 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.94■□□□□ 0.62
CXCL12P48061 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CXCL12P48061 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.94■□□□□ 0.62
CXCL12P48061 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.94■□□□□ 0.62
CXCL12P48061 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.94■□□□□ 0.62
CXCL12P48061 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.94■□□□□ 0.62
CXCL12P48061 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.94■□□□□ 0.62
CXCL12P48061 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.94■□□□□ 0.62
CXCL12P48061 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CXCL12P48061 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms