Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CHRNA4P43681 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.22■□□□□ 0.67
CHRNA4P43681 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.22■□□□□ 0.67
CHRNA4P43681 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHRNA4P43681 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.22■□□□□ 0.67
CHRNA4P43681 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.22■□□□□ 0.67
CHRNA4P43681 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHRNA4P43681 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHRNA4P43681 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHRNA4P43681 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CHRNA4P43681 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHRNA4P43681 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.22■□□□□ 0.67
CHRNA4P43681 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHRNA4P43681 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CHRNA4P43681 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHRNA4P43681 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.22■□□□□ 0.67
CHRNA4P43681 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CHRNA4P43681 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CHRNA4P43681 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.21■□□□□ 0.67
CHRNA4P43681 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.21■□□□□ 0.67
CHRNA4P43681 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.21■□□□□ 0.67
CHRNA4P43681 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.21■□□□□ 0.67
CHRNA4P43681 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.21■□□□□ 0.67
CHRNA4P43681 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.21■□□□□ 0.67
CHRNA4P43681 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.21■□□□□ 0.67
CHRNA4P43681 AC130371.2-201ENST00000619443 611 ntBASIC19.21■□□□□ 0.67
CHRNA4P43681 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.21■□□□□ 0.67
CHRNA4P43681 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.21■□□□□ 0.67
CHRNA4P43681 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.21■□□□□ 0.67
CHRNA4P43681 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.21■□□□□ 0.67
CHRNA4P43681 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHRNA4P43681 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
CHRNA4P43681 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
CHRNA4P43681 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
CHRNA4P43681 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.2■□□□□ 0.66
CHRNA4P43681 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
CHRNA4P43681 NUDT16P1-203ENST00000513809 620 ntBASIC19.2■□□□□ 0.66
CHRNA4P43681 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.2■□□□□ 0.66
CHRNA4P43681 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CHRNA4P43681 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHRNA4P43681 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.2■□□□□ 0.66
CHRNA4P43681 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.2■□□□□ 0.66
CHRNA4P43681 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.2■□□□□ 0.66
CHRNA4P43681 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHRNA4P43681 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.2■□□□□ 0.66
CHRNA4P43681 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CHRNA4P43681 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.19■□□□□ 0.66
CHRNA4P43681 TSPY7P-201ENST00000431358 1114 ntBASIC19.19■□□□□ 0.66
CHRNA4P43681 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.19■□□□□ 0.66
CHRNA4P43681 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.19■□□□□ 0.66
CHRNA4P43681 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.19■□□□□ 0.66
CHRNA4P43681 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.19■□□□□ 0.66
CHRNA4P43681 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.19■□□□□ 0.66
CHRNA4P43681 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.19■□□□□ 0.66
CHRNA4P43681 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHRNA4P43681 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHRNA4P43681 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.19■□□□□ 0.66
CHRNA4P43681 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHRNA4P43681 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHRNA4P43681 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.18■□□□□ 0.66
CHRNA4P43681 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHRNA4P43681 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHRNA4P43681 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHRNA4P43681 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHRNA4P43681 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.18■□□□□ 0.66
CHRNA4P43681 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms