Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A2P08572 HOXB1-202ENST00000577092 1414 ntBASIC19.2■□□□□ 0.66
COL4A2P08572 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A2P08572 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 AC004263.2-201ENST00000617183 678 ntBASIC19.2■□□□□ 0.66
COL4A2P08572 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A2P08572 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A2P08572 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A2P08572 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A2P08572 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.2■□□□□ 0.66
COL4A2P08572 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A2P08572 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.2■□□□□ 0.66
COL4A2P08572 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A2P08572 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A2P08572 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A2P08572 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A2P08572 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A2P08572 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A2P08572 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A2P08572 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A2P08572 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A2P08572 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.19■□□□□ 0.66
COL4A2P08572 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A2P08572 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
COL4A2P08572 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A2P08572 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A2P08572 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A2P08572 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A2P08572 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.18■□□□□ 0.66
COL4A2P08572 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
COL4A2P08572 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A2P08572 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL4A2P08572 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A2P08572 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A2P08572 AC010240.3-201ENST00000607688 395 ntBASIC19.18■□□□□ 0.66
COL4A2P08572 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A2P08572 TEX21P-204ENST00000641479 1693 ntBASIC19.18■□□□□ 0.66
COL4A2P08572 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A2P08572 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
COL4A2P08572 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A2P08572 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A2P08572 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.17■□□□□ 0.66
COL4A2P08572 AC074051.2-201ENST00000565115 352 ntBASIC19.17■□□□□ 0.66
COL4A2P08572 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
COL4A2P08572 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A2P08572 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A2P08572 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A2P08572 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL4A2P08572 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms