Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 STARP1-201ENST00000397973 869 ntBASIC15.93■□□□□ 0.14
ABCA1O95477 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.93■□□□□ 0.14
ABCA1O95477 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA1O95477 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
ABCA1O95477 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
ABCA1O95477 AC111152.3-201ENST00000569699 673 ntBASIC15.93■□□□□ 0.14
ABCA1O95477 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.93■□□□□ 0.14
ABCA1O95477 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA1O95477 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
ABCA1O95477 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA1O95477 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
ABCA1O95477 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
ABCA1O95477 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA1O95477 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA1O95477 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 VENTXP5-201ENST00000523979 775 ntBASIC15.92■□□□□ 0.14
ABCA1O95477 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 LINC01465-201ENST00000408887 1940 ntBASIC15.92■□□□□ 0.14
ABCA1O95477 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA1O95477 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
ABCA1O95477 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA1O95477 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA1O95477 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA1O95477 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA1O95477 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA1O95477 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA1O95477 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA1O95477 MIR3180-1-201ENST00000580374 94 ntBASIC15.92■□□□□ 0.14
ABCA1O95477 MIR3180-3-201ENST00000584616 94 ntBASIC15.92■□□□□ 0.14
ABCA1O95477 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
ABCA1O95477 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
ABCA1O95477 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA1O95477 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ABCA1O95477 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA1O95477 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.91■□□□□ 0.14
ABCA1O95477 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 KRT18P38-201ENST00000449496 1282 ntBASIC15.91■□□□□ 0.14
ABCA1O95477 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.91■□□□□ 0.14
ABCA1O95477 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.91■□□□□ 0.14
ABCA1O95477 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.91■□□□□ 0.14
ABCA1O95477 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.91■□□□□ 0.14
ABCA1O95477 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.91■□□□□ 0.14
ABCA1O95477 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.91■□□□□ 0.14
ABCA1O95477 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 TMEM179-206ENST00000616017 1645 ntBASIC15.91■□□□□ 0.14
ABCA1O95477 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
ABCA1O95477 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
ABCA1O95477 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms