Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC23.98■■□□□ 1.43
CACNA1FO60840 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC23.98■■□□□ 1.43
CACNA1FO60840 TK2-213ENST00000563369 882 ntTSL 5 BASIC23.98■■□□□ 1.43
CACNA1FO60840 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC23.98■■□□□ 1.43
CACNA1FO60840 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
CACNA1FO60840 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.98■■□□□ 1.43
CACNA1FO60840 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
CACNA1FO60840 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.98■■□□□ 1.43
CACNA1FO60840 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.98■■□□□ 1.43
CACNA1FO60840 MIR4674-201ENST00000582457 87 ntBASIC23.98■■□□□ 1.43
CACNA1FO60840 MYC-208ENST00000641036 567 ntBASIC23.98■■□□□ 1.43
CACNA1FO60840 AC068587.9-201ENST00000641814 219 ntBASIC23.98■■□□□ 1.43
CACNA1FO60840 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
CACNA1FO60840 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CACNA1FO60840 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC23.97■■□□□ 1.43
CACNA1FO60840 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
CACNA1FO60840 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.97■■□□□ 1.43
CACNA1FO60840 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.97■■□□□ 1.43
CACNA1FO60840 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 AC006011.2-201ENST00000621313 1158 ntBASIC23.97■■□□□ 1.43
CACNA1FO60840 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.97■■□□□ 1.43
CACNA1FO60840 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
CACNA1FO60840 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
CACNA1FO60840 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.97■■□□□ 1.43
CACNA1FO60840 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CACNA1FO60840 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
CACNA1FO60840 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 AP000593.1-201ENST00000393668 712 ntBASIC23.96■■□□□ 1.43
CACNA1FO60840 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC23.96■■□□□ 1.43
CACNA1FO60840 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC23.96■■□□□ 1.43
CACNA1FO60840 SEC1P-202ENST00000473944 940 ntBASIC23.96■■□□□ 1.43
CACNA1FO60840 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.96■■□□□ 1.43
CACNA1FO60840 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
CACNA1FO60840 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.96■■□□□ 1.43
CACNA1FO60840 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 MCCD1P1-208ENST00000445732 328 ntBASIC23.96■■□□□ 1.43
CACNA1FO60840 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC23.96■■□□□ 1.43
CACNA1FO60840 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CACNA1FO60840 AC006333.2-201ENST00000607957 2099 ntBASIC23.96■■□□□ 1.43
CACNA1FO60840 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 AL512353.2-201ENST00000448759 1962 ntBASIC23.95■■□□□ 1.42
CACNA1FO60840 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC23.95■■□□□ 1.42
CACNA1FO60840 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC23.95■■□□□ 1.42
CACNA1FO60840 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.95■■□□□ 1.42
CACNA1FO60840 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.95■■□□□ 1.42
CACNA1FO60840 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CACNA1FO60840 AP000523.1-201ENST00000398242 1049 ntBASIC23.94■■□□□ 1.42
CACNA1FO60840 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC23.94■■□□□ 1.42
CACNA1FO60840 FAM210CP-201ENST00000445714 574 ntBASIC23.94■■□□□ 1.42
CACNA1FO60840 DUX4L26-201ENST00000489078 1255 ntBASIC23.94■■□□□ 1.42
CACNA1FO60840 AC063952.2-201ENST00000498792 1227 ntBASIC23.94■■□□□ 1.42
CACNA1FO60840 KRT18P21-201ENST00000515767 1272 ntBASIC23.94■■□□□ 1.42
CACNA1FO60840 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC23.94■■□□□ 1.42
CACNA1FO60840 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC23.94■■□□□ 1.42
CACNA1FO60840 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CACNA1FO60840 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.94■■□□□ 1.42
CACNA1FO60840 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms