Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 TSPY23P-201ENST00000440136 739 ntBASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
TRAV40A0A0B4J280 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 TSPY21P-201ENST00000433481 731 ntBASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 AC063952.2-201ENST00000498792 1227 ntBASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 LTBR-211ENST00000543190 785 ntTSL 3 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV40A0A0B4J280 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 RNF152P1-201ENST00000397754 604 ntBASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 AL023973.1-201ENST00000624619 620 ntBASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 KRT8P45-201ENST00000414328 1447 ntBASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV40A0A0B4J280 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms