Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 AC090192.1-201ENST00000517740 490 ntBASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
TRAV3A0A0B4J244 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
TRAV3A0A0B4J244 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 UNC93B5-201ENST00000530315 699 ntBASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 AC008403.3-201ENST00000598924 454 ntBASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV3A0A0B4J244 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC090164.3-201ENST00000610780 2143 ntBASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AL355802.2-201ENST00000402069 882 ntBASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 KLF13-207ENST00000560473 489 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 HLA-A-209ENST00000638375 975 ntBASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 NBPF21P-201ENST00000425093 1451 ntBASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV3A0A0B4J244 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TRAV3A0A0B4J244 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms