Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-222P-201ENST00000362438 107 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-428P-201ENST00000362942 107 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-1290P-201ENST00000362957 109 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SNORD14B-201ENST00000364533 90 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNA5SP235-201ENST00000365411 114 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SNORA70.10-201ENST00000384515 134 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SNORA66-201ENST00000384792 133 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AL022722.2-201ENST00000402519 180 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AL117339.3-201ENST00000418733 162 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 TOMM20P4-201ENST00000427861 435 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RPL21P40-201ENST00000428586 483 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AL163193.1-201ENST00000444895 788 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 FABP5P15-201ENST00000453566 214 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RPS20P22-201ENST00000473700 357 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 MRPL42P6-201ENST00000486397 371 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RPL21P13-201ENST00000488305 481 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 ANXA2P1-201ENST00000505539 926 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNA5SP249-201ENST00000516127 99 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 SCARNA15.2-201ENST00000516409 127 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-1012P-201ENST00000516606 109 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AP006245.1-201ENST00000522549 120 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 ATP5F1P5-201ENST00000526403 760 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 RN7SL435P-201ENST00000584418 282 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC105254.2-201ENST00000603636 436 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC087783.2-201ENST00000605070 562 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 AC004925.1-201ENST00000624256 2706 ntBASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HIF3AQ9Y2N7 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.286-201ENST00000364813 102 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 RNU6-81P-201ENST00000365608 104 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 SNORA53-201ENST00000391141 249 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.623-201ENST00000411128 95 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AC087477.1-201ENST00000465747 340 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 SNRPCP2-201ENST00000504370 475 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 RNU7-175P-201ENST00000515915 61 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 Y_RNA.679-201ENST00000516416 91 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 IGKV2-38-201ENST00000517443 247 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AC104581.2-201ENST00000572227 430 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 MIR4489-201ENST00000578869 62 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AL162424.1-201ENST00000602325 221 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 AL161629.2-201ENST00000615347 275 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 MAPK10-349ENST00000641767 3661 ntBASIC4.47□□□□□ -1.69
HIF3AQ9Y2N7 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
HIF3AQ9Y2N7 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
HIF3AQ9Y2N7 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
HIF3AQ9Y2N7 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.69
HIF3AQ9Y2N7 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.46□□□□□ -1.69
HIF3AQ9Y2N7 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 SNURFL-201ENST00000309296 343 ntBASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-1301P-201ENST00000362724 104 ntBASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-923P-201ENST00000364753 107 ntBASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 U3.15-201ENST00000365398 212 ntBASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 SNORD50.2-201ENST00000365465 70 ntBASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 RNU6-629P-201ENST00000384061 103 ntBASIC4.46□□□□□ -1.7
HIF3AQ9Y2N7 AL391361.1-201ENST00000405580 489 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms