RNA–Protein interactions for RNA: ENST00000362942.1

RNU6-428P-201, Transcript of RNA, U6 small nuclear 428, pseudogene, humanhuman

BASIC

Gene RNU6-428P, Length 107 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-428P-201ENST00000362942 AEBP2Q6ZN18 517 aaPredicted RBP13.58□□□□□ -0.24
RNU6-428P-201ENST00000362942 CHIC1Q5VXU3 224 aa13.43□□□□□ -0.26
RNU6-428P-201ENST00000362942 PHF23Q9BUL5 403 aaPredicted RBP11.74□□□□□ -0.53
RNU6-428P-201ENST00000362942 SENP3Q9H4L4 574 aaPredicted RBP11.66□□□□□ -0.54
RNU6-428P-201ENST00000362942 PLPPR3Q6T4P5 718 aa11.01□□□□□ -0.65
RNU6-428P-201ENST00000362942 POTEDQ86YR6 584 aa10.82□□□□□ -0.68
RNU6-428P-201ENST00000362942 FOXD1Q16676 465 aa10.72□□□□□ -0.69
RNU6-428P-201ENST00000362942 ADRA2BP18089 450 aa10.34□□□□□ -0.75
RNU6-428P-201ENST00000362942 PPP6R1Q9UPN7 881 aa10.32□□□□□ -0.76
RNU6-428P-201ENST00000362942 PIAS4Q8N2W9 510 aaPredicted RBP10.19□□□□□ -0.78
RNU6-428P-201ENST00000362942 MSH5O43196 834 aa9.98□□□□□ -0.81
RNU6-428P-201ENST00000362942 PPP4R3CPQ6ZMV5 832 aa9.66□□□□□ -0.86
RNU6-428P-201ENST00000362942 SCAF1Q9H7N4 1312 aaKnown RBP9.65□□□□□ -0.86
RNU6-428P-201ENST00000362942 NCBP3Q53F19 620 aaKnown RBP9.53□□□□□ -0.88
RNU6-428P-201ENST00000362942 KCNA4P22459 653 aa9.46□□□□□ -0.9
RNU6-428P-201ENST00000362942 CNKSR2Q8WXI2 1034 aa9.41□□□□□ -0.9
RNU6-428P-201ENST00000362942 MAPK8IP2Q13387 824 aaPredicted RBP9.34□□□□□ -0.91
RNU6-428P-201ENST00000362942 DMRT2Q9Y5R5 561 aa9.28□□□□□ -0.92
RNU6-428P-201ENST00000362942 NPM3O75607 178 aaKnown RBP9.26□□□□□ -0.93
RNU6-428P-201ENST00000362942 RNF216Q9NWF9 866 aaPredicted RBP9.2□□□□□ -0.94
RNU6-428P-201ENST00000362942 HOXD11P31277 338 aaPredicted RBP9.12□□□□□ -0.95
RNU6-428P-201ENST00000362942 SLC4A1APQ9BWU0 796 aaKnown RBP9.09□□□□□ -0.95
RNU6-428P-201ENST00000362942 DNAJC5BQ9UF47 199 aa9.04□□□□□ -0.96
RNU6-428P-201ENST00000362942 DCAF8L1A6NGE4 600 aa8.91□□□□□ -0.98
RNU6-428P-201ENST00000362942 EHMT2Q96KQ7 1210 aa8.87□□□□□ -0.99
RNU6-428P-201ENST00000362942 FOXD4L1Q9NU39 408 aa8.77□□□□□ -1.01
RNU6-428P-201ENST00000362942 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.74□□□□□ -1.01
RNU6-428P-201ENST00000362942 CACNB1Q02641 598 aaPredicted RBP8.71□□□□□ -1.02
RNU6-428P-201ENST00000362942 CSRNP3Q8WYN3 585 aa8.71□□□□□ -1.02
RNU6-428P-201ENST00000362942 SLC4A2P04920 1241 aa8.69□□□□□ -1.02
RNU6-428P-201ENST00000362942 ZBTB22O15209 634 aa8.65□□□□□ -1.02
RNU6-428P-201ENST00000362942 MYCNP04198 464 aaPredicted RBP8.63□□□□□ -1.03
RNU6-428P-201ENST00000362942 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.6□□□□□ -1.03
RNU6-428P-201ENST00000362942 HNRNPUL2Q1KMD3 747 aaKnown RBP8.6□□□□□ -1.03
RNU6-428P-201ENST00000362942 APLP2Q06481 763 aa8.54□□□□□ -1.04
RNU6-428P-201ENST00000362942 SAMD1Q6SPF0 538 aaPredicted RBP8.53□□□□□ -1.04
RNU6-428P-201ENST00000362942 U3KPZ7 1027 aaPredicted RBP8.53□□□□□ -1.04
RNU6-428P-201ENST00000362942 ATXN8OSP0DMR3 200 aa8.5□□□□□ -1.05
RNU6-428P-201ENST00000362942 RNF39Q9H2S5 420 aa8.48□□□□□ -1.05
RNU6-428P-201ENST00000362942 C1QBPQ07021 282 aaKnown RBP8.45□□□□□ -1.06
RNU6-428P-201ENST00000362942 ZNF219Q9P2Y4 722 aaPredicted RBP8.32□□□□□ -1.08
RNU6-428P-201ENST00000362942 CAPN15O75808 1086 aa8.3□□□□□ -1.08
RNU6-428P-201ENST00000362942 POTEHQ6S545 545 aa8.29□□□□□ -1.08
RNU6-428P-201ENST00000362942 ATF5Q9Y2D1 282 aaPredicted RBP8.26□□□□□ -1.09
RNU6-428P-201ENST00000362942 TRHP20396 242 aaPredicted RBP8.25□□□□□ -1.09
RNU6-428P-201ENST00000362942 SPINK5Q9NQ38 1064 aaPredicted RBP8.24□□□□□ -1.09
RNU6-428P-201ENST00000362942 POLA2Q14181 598 aa8.12□□□□□ -1.11
RNU6-428P-201ENST00000362942 ZBTB12Q9Y330 459 aaPredicted RBP8.11□□□□□ -1.11
RNU6-428P-201ENST00000362942 ABCB7O75027 752 aa8.09□□□□□ -1.11
RNU6-428P-201ENST00000362942 DSG3P32926 999 aa8.09□□□□□ -1.11
RNU6-428P-201ENST00000362942 FBLN2P98095 1184 aa8.09□□□□□ -1.11
RNU6-428P-201ENST00000362942 MKRN4PQ13434 485 aaPredicted RBP7.92□□□□□ -1.14
RNU6-428P-201ENST00000362942 FKBP8Q14318 412 aa7.92□□□□□ -1.14
RNU6-428P-201ENST00000362942 SPDYE4A6NLX3 237 aa7.87□□□□□ -1.15
RNU6-428P-201ENST00000362942 SPDYE2BA6NHP3 402 aa7.84□□□□□ -1.15
RNU6-428P-201ENST00000362942 SPDYE6P0CI01 402 aa7.84□□□□□ -1.15
RNU6-428P-201ENST00000362942 SPDYE2Q495Y8 402 aa7.84□□□□□ -1.15
RNU6-428P-201ENST00000362942 OSCARQ8IYS5 282 aa7.82□□□□□ -1.16
RNU6-428P-201ENST00000362942 RBM42Q9BTD8 480 aaKnown RBP7.82□□□□□ -1.16
RNU6-428P-201ENST00000362942 ZNF692Q9BU19 519 aaPredicted RBP7.81□□□□□ -1.16
RNU6-428P-201ENST00000362942 FBXO3Q9UK99 471 aa7.73□□□□□ -1.17
RNU6-428P-201ENST00000362942 SSUH2Q9Y2M2 353 aa7.73□□□□□ -1.17
RNU6-428P-201ENST00000362942 PROM2Q8N271 834 aa7.7□□□□□ -1.18
RNU6-428P-201ENST00000362942 AKT1S1Q96B36 256 aa7.7□□□□□ -1.18
RNU6-428P-201ENST00000362942 PABPN1Q86U42 306 aaKnown RBP eCLIP7.67□□□□□ -1.18
RNU6-428P-201ENST00000362942 STAG3Q9UJ98 1225 aa7.66□□□□□ -1.18
RNU6-428P-201ENST00000362942 SPDYE1Q8NFV5 336 aaPredicted RBP7.61□□□□□ -1.19
RNU6-428P-201ENST00000362942 REM2Q8IYK8 340 aaPredicted RBP7.57□□□□□ -1.2
RNU6-428P-201ENST00000362942 PLEKHG5O94827 1062 aa7.55□□□□□ -1.2
RNU6-428P-201ENST00000362942 CLEC11AQ9Y240 323 aa7.53□□□□□ -1.2
RNU6-428P-201ENST00000362942 VASPP50552 380 aaPredicted RBP7.52□□□□□ -1.21
RNU6-428P-201ENST00000362942 PRR29P0C7W0 189 aa7.5□□□□□ -1.21
RNU6-428P-201ENST00000362942 PLCD3Q8N3E9 789 aa7.49□□□□□ -1.21
RNU6-428P-201ENST00000362942 MIER1Q8N108 512 aa7.48□□□□□ -1.21
RNU6-428P-201ENST00000362942 ZBTB47Q9UFB7 747 aaPredicted RBP7.48□□□□□ -1.21
RNU6-428P-201ENST00000362942 PITPNM1O00562 1244 aa7.47□□□□□ -1.21
RNU6-428P-201ENST00000362942 KLHL34Q8N239 644 aa7.44□□□□□ -1.22
RNU6-428P-201ENST00000362942 AMER1Q5JTC6 1135 aaPredicted RBP7.42□□□□□ -1.22
RNU6-428P-201ENST00000362942 CHRDL2Q6WN34 429 aa7.38□□□□□ -1.23
RNU6-428P-201ENST00000362942 IFNLR1Q8IU57 520 aaPredicted RBP7.38□□□□□ -1.23
RNU6-428P-201ENST00000362942 SP7Q8TDD2 431 aaPredicted RBP7.36□□□□□ -1.23
RNU6-428P-201ENST00000362942 SPOCK2Q92563 424 aa7.36□□□□□ -1.23
RNU6-428P-201ENST00000362942 NPM1P06748 294 aaKnown RBP eCLIP7.35□□□□□ -1.23
RNU6-428P-201ENST00000362942 CREBZFQ9NS37 354 aa7.34□□□□□ -1.23
RNU6-428P-201ENST00000362942 FXR2P51116 673 aaKnown RBP eCLIP7.33□□□□□ -1.24
RNU6-428P-201ENST00000362942 PRKAR2AP13861 404 aaKnown RBP7.31□□□□□ -1.24
RNU6-428P-201ENST00000362942 PIP4P2Q8N4L2 257 aa7.28□□□□□ -1.24
RNU6-428P-201ENST00000362942 CHADLQ6NUI6 762 aa7.27□□□□□ -1.25
RNU6-428P-201ENST00000362942 GSE1Q14687 1217 aa7.26□□□□□ -1.25
RNU6-428P-201ENST00000362942 RTN4Q9NQC3 1192 aaKnown RBP7.26□□□□□ -1.25
RNU6-428P-201ENST00000362942 FARP1Q9Y4F1 1045 aaPredicted RBP7.26□□□□□ -1.25
RNU6-428P-201ENST00000362942 FAM212AQ96EL1 285 aa7.25□□□□□ -1.25
RNU6-428P-201ENST00000362942 MNX1P50219 401 aaPredicted RBP7.24□□□□□ -1.25
RNU6-428P-201ENST00000362942 TRIM41Q8WV44 630 aa7.24□□□□□ -1.25
RNU6-428P-201ENST00000362942 PAK3O75914 559 aaPredicted RBP7.23□□□□□ -1.25
RNU6-428P-201ENST00000362942 CIZ1Q9ULV3 898 aaPredicted RBP7.23□□□□□ -1.25
RNU6-428P-201ENST00000362942 NUBP1P53384 320 aa7.22□□□□□ -1.25
RNU6-428P-201ENST00000362942 DCAF8Q5TAQ9 597 aa7.21□□□□□ -1.26
RNU6-428P-201ENST00000362942 PLSCR2Q9NRY7 297 aa7.2□□□□□ -1.26
RNU6-428P-201ENST00000362942 ECM2O94769 699 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms