RNA–Protein interactions for RNA: ENST00000443617.6

HERC1-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC1, Length 15,137 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-201ENST00000443617 PELP1Q8IZL8 1130 aaKnown RBP8.47□□□□□ -1.05
HERC1-201ENST00000443617 NISCHQ9Y2I1 1504 aa8.46□□□□□ -1.05
HERC1-201ENST00000443617 HRCP23327 699 aa8.35□□□□□ -1.07
HERC1-201ENST00000443617 PCGF6Q9BYE7 350 aa8.24□□□□□ -1.09
HERC1-201ENST00000443617 MYT1Q01538 1121 aa8.23□□□□□ -1.09
HERC1-201ENST00000443617 SUPT5HO00267 1087 aaKnown RBP8.15□□□□□ -1.1
HERC1-201ENST00000443617 PPARGC1BQ86YN6 1023 aaKnown RBP8.12□□□□□ -1.11
HERC1-201ENST00000443617 ZEB1P37275 1124 aaPredicted RBP8.01□□□□□ -1.13
HERC1-201ENST00000443617 SHROOM4Q9ULL8 1493 aa7.98□□□□□ -1.13
HERC1-201ENST00000443617 CHIC1Q5VXU3 224 aa7.92□□□□□ -1.14
HERC1-201ENST00000443617 SCAF1Q9H7N4 1312 aaKnown RBP7.9□□□□□ -1.15
HERC1-201ENST00000443617 TRIM26Q12899 539 aaPredicted RBP7.89□□□□□ -1.15
HERC1-201ENST00000443617 CENPBP07199 599 aaPredicted RBP7.86□□□□□ -1.15
HERC1-201ENST00000443617 LOC105371045A0A1W2PR82 267 aa7.8□□□□□ -1.16
HERC1-201ENST00000443617 ACIN1Q9UKV3 1341 aaKnown RBP7.78□□□□□ -1.16
HERC1-201ENST00000443617 DCAF8L2P0C7V8 631 aa7.73□□□□□ -1.17
HERC1-201ENST00000443617 GTF3C3Q9Y5Q9 886 aa7.72□□□□□ -1.17
HERC1-201ENST00000443617 NEUROD1Q13562 356 aa7.68□□□□□ -1.18
HERC1-201ENST00000443617 TTBK1Q5TCY1 1321 aaPredicted RBP7.67□□□□□ -1.18
HERC1-201ENST00000443617 CCER1Q8TC90 406 aaPredicted RBP7.66□□□□□ -1.18
HERC1-201ENST00000443617 DCAF1Q9Y4B6 1507 aa7.64□□□□□ -1.19
HERC1-201ENST00000443617 DIEXFQ68CQ4 756 aaKnown RBP7.64□□□□□ -1.19
HERC1-201ENST00000443617 YTHDC1Q96MU7 727 aaKnown RBP7.61□□□□□ -1.19
HERC1-201ENST00000443617 MYO15BQ96JP2 1530 aa7.59□□□□□ -1.19
HERC1-201ENST00000443617 EHMT2Q96KQ7 1210 aa7.59□□□□□ -1.2
HERC1-201ENST00000443617 FAM9AQ8IZU1 332 aaPredicted RBP7.58□□□□□ -1.2
HERC1-201ENST00000443617 TRIM41Q8WV44 630 aa7.54□□□□□ -1.2
HERC1-201ENST00000443617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.54□□□□□ -1.2
HERC1-201ENST00000443617 BCL11AQ9H165 835 aa7.45□□□□□ -1.22
HERC1-201ENST00000443617 ZNF316A6NFI3 1004 aaPredicted RBP7.44□□□□□ -1.22
HERC1-201ENST00000443617 ANP32EQ9BTT0 268 aa7.41□□□□□ -1.22
HERC1-201ENST00000443617 MIER1Q8N108 512 aa7.38□□□□□ -1.23
HERC1-201ENST00000443617 CLSPNQ9HAW4 1339 aa7.38□□□□□ -1.23
HERC1-201ENST00000443617 CCDC180Q9P1Z9 1646 aa7.34□□□□□ -1.23
HERC1-201ENST00000443617 NEFLP07196 543 aa7.33□□□□□ -1.24
HERC1-201ENST00000443617 ERICH6Q7L0X2 663 aa7.31□□□□□ -1.24
HERC1-201ENST00000443617 APLP2Q06481 763 aa7.28□□□□□ -1.24
HERC1-201ENST00000443617 CSRNP3Q8WYN3 585 aa7.28□□□□□ -1.24
HERC1-201ENST00000443617 SUPT16HQ9Y5B9 1047 aaKnown RBP7.27□□□□□ -1.25
HERC1-201ENST00000443617 TSHZ2Q9NRE2 1034 aa7.26□□□□□ -1.25
HERC1-201ENST00000443617 HNRNPUL2Q1KMD3 747 aaKnown RBP7.26□□□□□ -1.25
HERC1-201ENST00000443617 BCANQ96GW7 911 aa7.26□□□□□ -1.25
HERC1-201ENST00000443617 UBTFP17480 764 aaKnown RBP7.25□□□□□ -1.25
HERC1-201ENST00000443617 MYT1LQ9UL68 1186 aa7.19□□□□□ -1.26
HERC1-201ENST00000443617 FKBP8Q14318 412 aa7.16□□□□□ -1.26
HERC1-201ENST00000443617 CDK11AQ9UQ88 783 aaPredicted RBP7.15□□□□□ -1.26
HERC1-201ENST00000443617 RBM19Q9Y4C8 960 aaKnown RBP7.14□□□□□ -1.27
HERC1-201ENST00000443617 ZCCHC6Q5VYS8 1495 aaKnown RBP7.13□□□□□ -1.27
HERC1-201ENST00000443617 PRKCSHP14314 528 aaPredicted RBP7.11□□□□□ -1.27
HERC1-201ENST00000443617 ITGAEP38570 1179 aa7.1□□□□□ -1.27
HERC1-201ENST00000443617 RANGAP1P46060 587 aaPredicted RBP7.08□□□□□ -1.28
HERC1-201ENST00000443617 DEKP35659 375 aaKnown RBP7.07□□□□□ -1.28
HERC1-201ENST00000443617 RTL5Q5HYW3 569 aaPredicted RBP7.07□□□□□ -1.28
HERC1-201ENST00000443617 ANP32CO43423 234 aa7.03□□□□□ -1.28
HERC1-201ENST00000443617 DDX10Q13206 875 aaKnown RBP7.01□□□□□ -1.29
HERC1-201ENST00000443617 NBR1Q14596 966 aa7□□□□□ -1.29
HERC1-201ENST00000443617 FANCIQ9NVI1 1328 aa7□□□□□ -1.29
HERC1-201ENST00000443617 RSF1Q96T23 1441 aaPredicted RBP7□□□□□ -1.29
HERC1-201ENST00000443617 ERICH6BQ5W0A0 696 aa6.99□□□□□ -1.29
HERC1-201ENST00000443617 TRIM52Q96A61 297 aa6.98□□□□□ -1.29
HERC1-201ENST00000443617 KCNH8Q96L42 1107 aa6.98□□□□□ -1.29
HERC1-201ENST00000443617 TNIKQ9UKE5 1360 aa6.96□□□□□ -1.3
HERC1-201ENST00000443617 ANP32AP39687 249 aaKnown RBP6.96□□□□□ -1.3
HERC1-201ENST00000443617 MSH5O43196 834 aa6.96□□□□□ -1.3
HERC1-201ENST00000443617 NOP58Q9Y2X3 529 aaKnown RBP6.95□□□□□ -1.3
HERC1-201ENST00000443617 CEP162Q5TB80 1403 aa6.95□□□□□ -1.3
HERC1-201ENST00000443617 IRX6P78412 446 aaPredicted RBP6.94□□□□□ -1.3
HERC1-201ENST00000443617 PPP4R2Q9NY27 417 aa6.94□□□□□ -1.3
HERC1-201ENST00000443617 WRNQ14191 1432 aaPredicted RBP eCLIP6.94□□□□□ -1.3
HERC1-201ENST00000443617 ANO8Q9HCE9 1232 aaPredicted RBP6.94□□□□□ -1.3
HERC1-201ENST00000443617 CCER2I3L3R5 266 aa6.93□□□□□ -1.3
HERC1-201ENST00000443617 EIF5BO60841 1220 aaKnown RBP6.91□□□□□ -1.3
HERC1-201ENST00000443617 ZBTB47Q9UFB7 747 aaPredicted RBP6.91□□□□□ -1.3
HERC1-201ENST00000443617 DAXXQ9UER7 740 aaPredicted RBP6.91□□□□□ -1.3
HERC1-201ENST00000443617 HNRNPUQ00839 825 aaKnown RBP eCLIP6.9□□□□□ -1.3
HERC1-201ENST00000443617 CCDC136Q96JN2 1154 aa6.89□□□□□ -1.31
HERC1-201ENST00000443617 RTN4Q9NQC3 1192 aaKnown RBP6.87□□□□□ -1.31
HERC1-201ENST00000443617 SALL2Q9Y467 1007 aaPredicted RBP6.86□□□□□ -1.31
HERC1-201ENST00000443617 CLIP1P30622 1438 aa6.86□□□□□ -1.31
HERC1-201ENST00000443617 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.85□□□□□ -1.31
HERC1-201ENST00000443617 B4GALNT3Q6L9W6 998 aa6.85□□□□□ -1.31
HERC1-201ENST00000443617 IPO9Q96P70 1041 aaKnown RBP6.83□□□□□ -1.32
HERC1-201ENST00000443617 FAM50AQ14320 339 aaKnown RBP6.83□□□□□ -1.32
HERC1-201ENST00000443617 NPM2Q86SE8 214 aaKnown RBP6.83□□□□□ -1.32
HERC1-201ENST00000443617 PPP1R15AO75807 674 aaPredicted RBP6.83□□□□□ -1.32
HERC1-201ENST00000443617 HIRIP3Q9BW71 556 aaPredicted RBP6.83□□□□□ -1.32
HERC1-201ENST00000443617 NEFMP07197 916 aa6.82□□□□□ -1.32
HERC1-201ENST00000443617 GLIPR1L2Q4G1C9 344 aa6.82□□□□□ -1.32
HERC1-201ENST00000443617 DHX57Q6P158 1386 aaKnown RBP6.82□□□□□ -1.32
HERC1-201ENST00000443617 LAS1LQ9Y4W2 734 aaKnown RBP6.81□□□□□ -1.32
HERC1-201ENST00000443617 EEA1Q15075 1411 aa6.8□□□□□ -1.32
HERC1-201ENST00000443617 SOGA1O94964 1423 aa6.8□□□□□ -1.32
HERC1-201ENST00000443617 TIMELESSQ9UNS1 1208 aa6.8□□□□□ -1.32
HERC1-201ENST00000443617 ATP1B4Q9UN42 357 aaPredicted RBP6.79□□□□□ -1.32
HERC1-201ENST00000443617 PAK3O75914 559 aaPredicted RBP6.79□□□□□ -1.32
HERC1-201ENST00000443617 PPM1GO15355 546 aaPredicted RBP6.78□□□□□ -1.32
HERC1-201ENST00000443617 IL27Q8NEV9 243 aa6.78□□□□□ -1.32
HERC1-201ENST00000443617 SIN3AQ96ST3 1273 aa6.78□□□□□ -1.32
HERC1-201ENST00000443617 FAM9BQ8IZU0 186 aa6.78□□□□□ -1.32
HERC1-201ENST00000443617 KANK4Q5T7N3 995 aaPredicted RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms