Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.96■□□□□ 0.79
USP3Q9Y6I4 FEM1AP3-201ENST00000403722 1741 ntBASIC19.96■□□□□ 0.79
USP3Q9Y6I4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.96■□□□□ 0.79
USP3Q9Y6I4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 AC005363.2-201ENST00000618631 242 ntBASIC19.95■□□□□ 0.78
USP3Q9Y6I4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.95■□□□□ 0.78
USP3Q9Y6I4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 SLC25A3P1-201ENST00000443844 931 ntBASIC19.94■□□□□ 0.78
USP3Q9Y6I4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP3Q9Y6I4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 AC073508.3-201ENST00000619697 1419 ntBASIC19.93■□□□□ 0.78
USP3Q9Y6I4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 IRX1P1-201ENST00000438849 1838 ntBASIC19.93■□□□□ 0.78
USP3Q9Y6I4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 RCN1P1-201ENST00000400413 996 ntBASIC19.93■□□□□ 0.78
USP3Q9Y6I4 AC113347.1-201ENST00000413321 391 ntBASIC19.93■□□□□ 0.78
USP3Q9Y6I4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.93■□□□□ 0.78
USP3Q9Y6I4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.93■□□□□ 0.78
USP3Q9Y6I4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.92■□□□□ 0.78
USP3Q9Y6I4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
USP3Q9Y6I4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
USP3Q9Y6I4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms