Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 KRT18P16-201ENST00000510337 1294 ntBASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 AC012183.1-201ENST00000625197 499 ntBASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 AP001271.2-201ENST00000624018 1556 ntBASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PCDHB3Q9Y5E6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 TUBB8P6-201ENST00000436895 1288 ntBASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 CR392000.1-201ENST00000624770 1228 ntBASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDHB3Q9Y5E6 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC116562.2-201ENST00000507042 360 ntBASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 REXO1L10P-201ENST00000615707 1290 ntBASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC005363.2-201ENST00000618631 242 ntBASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AL445675.2-201ENST00000620291 557 ntBASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 AL138781.2-201ENST00000617896 1843 ntBASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDHB3Q9Y5E6 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
PCDHB3Q9Y5E6 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHB3Q9Y5E6 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PCDHB3Q9Y5E6 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.64■□□□□ 0.58
PCDHB3Q9Y5E6 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDHB3Q9Y5E6 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms