Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LSM4Q9Y4Z0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 AC090164.3-201ENST00000610780 2143 ntBASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 POM121L13P-201ENST00000422362 380 ntBASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 WIZP1-201ENST00000531444 2299 ntBASIC15.26■□□□□ 0.03
LSM4Q9Y4Z0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 SNORA78-201ENST00000459373 127 ntBASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LSM4Q9Y4Z0 AIRN-201ENST00000601203 4374 ntBASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LSM4Q9Y4Z0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms