Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 AC093525.10-201ENST00000625130 1569 ntBASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
HIF3AQ9Y2N7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HIF3AQ9Y2N7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.34
HIF3AQ9Y2N7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HIF3AQ9Y2N7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 AC239809.2-201ENST00000415381 517 ntBASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 AL031598.1-201ENST00000561511 1773 ntBASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.2■□□□□ 0.34
HIF3AQ9Y2N7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HIF3AQ9Y2N7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms