Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 KRT18P35-201ENST00000510488 1269 ntBASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLCF1Q9UBD9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 AC117947.1-201ENST00000427448 529 ntBASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.96■□□□□ 0.31
CLCF1Q9UBD9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.96■□□□□ 0.3
CLCF1Q9UBD9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLCF1Q9UBD9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLCF1Q9UBD9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLCF1Q9UBD9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLCF1Q9UBD9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.96■□□□□ 0.3
CLCF1Q9UBD9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 PCDHAC2-203ENST00000615316 3011 ntBASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 AC141257.4-201ENST00000634557 245 ntBASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 AC136944.6-201ENST00000634818 245 ntBASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.95■□□□□ 0.3
CLCF1Q9UBD9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 AK4P3-201ENST00000418260 669 ntBASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 Z82202.1-201ENST00000623446 1880 ntBASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 KRT8P45-201ENST00000414328 1447 ntBASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms