Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.07■□□□□ 0.48
SCN3AQ9NY46 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.07■□□□□ 0.48
SCN3AQ9NY46 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 AC007663.1-201ENST00000438948 1240 ntBASIC18.06■□□□□ 0.48
SCN3AQ9NY46 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 ECEL1P2-202ENST00000465689 757 ntBASIC18.06■□□□□ 0.48
SCN3AQ9NY46 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.06■□□□□ 0.48
SCN3AQ9NY46 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 AC211429.1-201ENST00000415277 523 ntBASIC18.05■□□□□ 0.48
SCN3AQ9NY46 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
SCN3AQ9NY46 AC130371.2-201ENST00000619443 611 ntBASIC18.05■□□□□ 0.48
SCN3AQ9NY46 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.04■□□□□ 0.48
SCN3AQ9NY46 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SCN3AQ9NY46 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms