Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 HLA-B-256ENST00000639848 1089 ntBASIC18.85■□□□□ 0.61
MKS1Q9NXB0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MKS1Q9NXB0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 TSPY23P-201ENST00000440136 739 ntBASIC18.84■□□□□ 0.61
MKS1Q9NXB0 AL162430.1-201ENST00000480705 870 ntBASIC18.84■□□□□ 0.61
MKS1Q9NXB0 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MKS1Q9NXB0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 AC020916.1-201ENST00000587762 1774 ntBASIC18.83■□□□□ 0.61
MKS1Q9NXB0 AC126763.1-201ENST00000552015 2118 ntBASIC18.83■□□□□ 0.61
MKS1Q9NXB0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MKS1Q9NXB0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.83■□□□□ 0.6
MKS1Q9NXB0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MKS1Q9NXB0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 RARRES2P6-201ENST00000567333 442 ntBASIC18.82■□□□□ 0.6
MKS1Q9NXB0 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 AC080038.1-201ENST00000611274 1154 ntBASIC18.82■□□□□ 0.6
MKS1Q9NXB0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 HEIH-201ENST00000623091 1652 ntBASIC18.82■□□□□ 0.6
MKS1Q9NXB0 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MKS1Q9NXB0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms