Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 AL390719.1-204ENST00000412397 1219 ntBASIC16.62■□□□□ 0.25
NKX3-1Q99801 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 AC005829.2-201ENST00000571422 1056 ntBASIC16.62■□□□□ 0.25
NKX3-1Q99801 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NKX3-1Q99801 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.62■□□□□ 0.25
NKX3-1Q99801 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 BCL2-203ENST00000589955 5011 ntBASIC16.61■□□□□ 0.25
NKX3-1Q99801 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 LETM1P2-201ENST00000597330 2178 ntBASIC16.61■□□□□ 0.25
NKX3-1Q99801 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 RPS2P52-201ENST00000469610 820 ntBASIC16.61■□□□□ 0.25
NKX3-1Q99801 AL138781.1-201ENST00000566567 1274 ntBASIC16.61■□□□□ 0.25
NKX3-1Q99801 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.61■□□□□ 0.25
NKX3-1Q99801 IRX1P1-201ENST00000438849 1838 ntBASIC16.61■□□□□ 0.25
NKX3-1Q99801 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NKX3-1Q99801 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.6■□□□□ 0.25
NKX3-1Q99801 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 MIPEPP3-201ENST00000412105 444 ntBASIC16.6■□□□□ 0.25
NKX3-1Q99801 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NKX3-1Q99801 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
NKX3-1Q99801 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms