Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CDX2Q99626 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.98■□□□□ 0.79
CDX2Q99626 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
CDX2Q99626 FAM8A3P-201ENST00000427218 844 ntBASIC19.97■□□□□ 0.79
CDX2Q99626 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 RN7SL606P-201ENST00000472779 293 ntBASIC19.97■□□□□ 0.79
CDX2Q99626 CYMP-203ENST00000474680 1263 ntBASIC19.97■□□□□ 0.79
CDX2Q99626 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.97■□□□□ 0.79
CDX2Q99626 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.97■□□□□ 0.79
CDX2Q99626 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.97■□□□□ 0.79
CDX2Q99626 MIR5100-201ENST00000579544 119 ntBASIC19.97■□□□□ 0.79
CDX2Q99626 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
CDX2Q99626 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.97■□□□□ 0.79
CDX2Q99626 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX2Q99626 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CDX2Q99626 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CDX2Q99626 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CDX2Q99626 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.96■□□□□ 0.79
CDX2Q99626 AL035633.1-201ENST00000406139 838 ntBASIC19.96■□□□□ 0.79
CDX2Q99626 AL591424.1-201ENST00000442569 1213 ntBASIC19.96■□□□□ 0.79
CDX2Q99626 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.96■□□□□ 0.79
CDX2Q99626 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.96■□□□□ 0.79
CDX2Q99626 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.96■□□□□ 0.79
CDX2Q99626 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.96■□□□□ 0.79
CDX2Q99626 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CDX2Q99626 C9orf163-202ENST00000624034 2573 ntBASIC19.96■□□□□ 0.79
CDX2Q99626 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX2Q99626 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.95■□□□□ 0.78
CDX2Q99626 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CDX2Q99626 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.95■□□□□ 0.78
CDX2Q99626 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.95■□□□□ 0.78
CDX2Q99626 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.95■□□□□ 0.78
CDX2Q99626 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.95■□□□□ 0.78
CDX2Q99626 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.95■□□□□ 0.78
CDX2Q99626 GPR32P1-201ENST00000601788 811 ntBASIC19.95■□□□□ 0.78
CDX2Q99626 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX2Q99626 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CDX2Q99626 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
CDX2Q99626 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.94■□□□□ 0.78
CDX2Q99626 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 RPS2P28-201ENST00000314255 741 ntBASIC19.94■□□□□ 0.78
CDX2Q99626 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.94■□□□□ 0.78
CDX2Q99626 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.94■□□□□ 0.78
CDX2Q99626 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.94■□□□□ 0.78
CDX2Q99626 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CDX2Q99626 IGHV3-22-201ENST00000520721 359 ntBASIC19.94■□□□□ 0.78
CDX2Q99626 RFPL4AP1-201ENST00000530883 850 ntBASIC19.94■□□□□ 0.78
CDX2Q99626 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.94■□□□□ 0.78
CDX2Q99626 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.94■□□□□ 0.78
CDX2Q99626 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.94■□□□□ 0.78
CDX2Q99626 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.94■□□□□ 0.78
CDX2Q99626 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.94■□□□□ 0.78
CDX2Q99626 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CDX2Q99626 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms