Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC140Q96MF4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 MESTP1-201ENST00000404287 994 ntBASIC14.77□□□□□ -0.05
CCDC140Q96MF4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 AC008040.2-201ENST00000461049 708 ntBASIC14.77□□□□□ -0.05
CCDC140Q96MF4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 AC008550.1-201ENST00000511500 884 ntBASIC14.77□□□□□ -0.05
CCDC140Q96MF4 PENK-204ENST00000518770 863 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC140Q96MF4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 AC120498.9-201ENST00000339021 3867 ntBASIC14.76□□□□□ -0.05
CCDC140Q96MF4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 NUDT16P1-203ENST00000513809 620 ntBASIC14.76□□□□□ -0.05
CCDC140Q96MF4 PRSS44-201ENST00000515154 1146 ntBASIC14.76□□□□□ -0.05
CCDC140Q96MF4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 AC006333.2-201ENST00000607957 2099 ntBASIC14.76□□□□□ -0.05
CCDC140Q96MF4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 AIRN-201ENST00000601203 4374 ntBASIC14.76□□□□□ -0.05
CCDC140Q96MF4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC140Q96MF4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 FAM207BP-201ENST00000447172 505 ntBASIC14.75□□□□□ -0.05
CCDC140Q96MF4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 AC130371.2-201ENST00000619443 611 ntBASIC14.75□□□□□ -0.05
CCDC140Q96MF4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC140Q96MF4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms