Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.58■□□□□ 0.89
CCDC42Q96M95 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CCDC42Q96M95 AL137784.2-201ENST00000607332 1000 ntBASIC20.58■□□□□ 0.89
CCDC42Q96M95 HLA-B-256ENST00000639848 1089 ntBASIC20.58■□□□□ 0.89
CCDC42Q96M95 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC42Q96M95 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC42Q96M95 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC42Q96M95 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC42Q96M95 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC42Q96M95 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC42Q96M95 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC42Q96M95 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC42Q96M95 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC42Q96M95 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC42Q96M95 AC026471.1-201ENST00000564629 3026 ntBASIC20.56■□□□□ 0.88
CCDC42Q96M95 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 AC006970.2-201ENST00000450065 779 ntBASIC20.56■□□□□ 0.88
CCDC42Q96M95 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC42Q96M95 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC42Q96M95 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 SLC29A4P1-201ENST00000398760 971 ntBASIC20.55■□□□□ 0.88
CCDC42Q96M95 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 AC097658.1-201ENST00000475555 843 ntBASIC20.55■□□□□ 0.88
CCDC42Q96M95 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 AC120498.8-201ENST00000614275 531 ntBASIC20.55■□□□□ 0.88
CCDC42Q96M95 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC42Q96M95 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC42Q96M95 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms