Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 PRKY-204ENST00000533551 1019 ntBASIC14.3□□□□□ -0.12
LINC00477Q96M19 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 AC133041.1-202ENST00000642053 222 ntBASIC14.3□□□□□ -0.12
LINC00477Q96M19 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LINC00477Q96M19 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
LINC00477Q96M19 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 AL031598.1-201ENST00000561511 1773 ntBASIC14.29□□□□□ -0.12
LINC00477Q96M19 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 RHOD-202ENST00000532559 538 ntTSL 3 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 SOX15-203ENST00000570788 1093 ntBASIC14.29□□□□□ -0.12
LINC00477Q96M19 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 AC079598.2-202ENST00000546624 1451 ntBASIC14.29□□□□□ -0.12
LINC00477Q96M19 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00477Q96M19 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.29□□□□□ -0.12
LINC00477Q96M19 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 MAP2K4P1-201ENST00000438453 1195 ntBASIC14.28□□□□□ -0.12
LINC00477Q96M19 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LINC00477Q96M19 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00477Q96M19 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00477Q96M19 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms