Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.329e-8■■■■□ 19.5
UPF1Q92900 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.429e-8■■■■□ 19.5
UPF1Q92900 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.968e-8■■■■□ 19.5
UPF1Q92900 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.238e-8■■■■□ 19.5
UPF1Q92900 RELT-207ENST00000545886 4346 ntTSL 213.53□□□□□ -0.248e-8■■■■□ 19.5
UPF1Q92900 RELT-204ENST00000539134 3244 ntTSL 212.1□□□□□ -0.478e-8■■■■□ 19.5
UPF1Q92900 C10orf128-204ENST00000374156 2070 ntTSL 1 (best)17.74■□□□□ 0.436e-6■■■■□ 19.5
UPF1Q92900 C10orf128-203ENST00000374153 1569 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.266e-6■■■■□ 19.5
UPF1Q92900 C10orf128-202ENST00000374151 1971 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.096e-6■■■■□ 19.5
UPF1Q92900 COA3-202ENST00000586680 1374 ntTSL 226.18■■□□□ 1.789e-7■■■■□ 19.5
UPF1Q92900 COA3-201ENST00000328434 771 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.269e-7■■■■□ 19.5
UPF1Q92900 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC23.9■■□□□ 1.422e-9■■■■□ 19.5
UPF1Q92900 GATD1-216ENST00000534603 863 ntTSL 1 (best)22.09■■□□□ 1.132e-13■■■■□ 19.5
UPF1Q92900 GATD1-211ENST00000529966 800 ntTSL 1 (best)20.31■□□□□ 0.842e-13■■■■□ 19.5
UPF1Q92900 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.995e-7■■■■□ 19.5
UPF1Q92900 C10orf76-202ENST00000370033 4119 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.336e-7■■■■□ 19.5
UPF1Q92900 TRABD-206ENST00000472677 1661 ntTSL 1 (best)27.9■■■□□ 2.069e-8■■■■□ 19.5
UPF1Q92900 KCTD17-207ENST00000478231 584 ntTSL 519.54■□□□□ 0.729e-8■■■■□ 19.5
UPF1Q92900 KCTD17-206ENST00000462640 808 ntTSL 515.08■□□□□ 09e-8■■■■□ 19.5
UPF1Q92900 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.2■■□□□ 1.463e-7■■■■□ 19.4
UPF1Q92900 MXRA7-206ENST00000589082 560 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.282e-10■■■■□ 19.4
UPF1Q92900 CDH2-201ENST00000269141 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.51e-6■■■■□ 19.4
UPF1Q92900 FTO-202ENST00000431610 707 ntTSL 3 BASIC10.85□□□□□ -0.672e-10■■■■□ 19.4
UPF1Q92900 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC7.26□□□□□ -1.251e-6■■■■□ 19.4
UPF1Q92900 STRIP1-205ENST00000485775 3363 ntTSL 1 (best)11.78□□□□□ -0.525e-7■■■■□ 19.4
UPF1Q92900 STRIP1-201ENST00000369795 3265 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.665e-7■■■■□ 19.4
UPF1Q92900 STRIP1-204ENST00000473429 4870 ntTSL 29.86□□□□□ -0.835e-7■■■■□ 19.4
UPF1Q92900 STRIP1-202ENST00000369796 3125 ntTSL 2 BASIC9.78□□□□□ -0.845e-7■■■■□ 19.4
UPF1Q92900 RNMT-208ENST00000591922 581 ntTSL 411.6□□□□□ -0.551e-7■■■■□ 19.4
UPF1Q92900 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.451e-7■■■■□ 19.4
UPF1Q92900 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.471e-7■■■■□ 19.4
UPF1Q92900 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.87□□□□□ -1.471e-7■■■■□ 19.4
UPF1Q92900 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC32.53■■■□□ 2.89e-13■■■■□ 19.4
UPF1Q92900 FGD5-AS1-201ENST00000417835 1630 ntTSL 1 (best)28.43■■■□□ 2.149e-13■■■■□ 19.4
UPF1Q92900 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.05■□□□□ -09e-13■■■■□ 19.4
UPF1Q92900 GET4-206ENST00000464468 676 ntTSL 324.39■■□□□ 1.494e-10■■■■□ 19.4
UPF1Q92900 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.083e-7■■■■□ 19.4
UPF1Q92900 BNIP3-202ENST00000540159 3066 ntTSL 1 (best)13.59□□□□□ -0.233e-7■■■■□ 19.4
UPF1Q92900 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.292e-9■■■■□ 19.4
UPF1Q92900 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.331e-9■■■■□ 19.4
UPF1Q92900 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.367e-23■■■■□ 19.4
UPF1Q92900 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.967e-23■■■■□ 19.4
UPF1Q92900 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.917e-23■■■■□ 19.4
UPF1Q92900 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.527e-23■■■■□ 19.4
UPF1Q92900 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.377e-23■■■■□ 19.4
UPF1Q92900 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.312e-6■■■■□ 19.4
UPF1Q92900 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.314e-14■■■■□ 19.4
UPF1Q92900 RAPGEF6-211ENST00000512611 3683 ntTSL 1 (best)6.5□□□□□ -1.374e-14■■■■□ 19.4
UPF1Q92900 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.54e-14■■■■□ 19.4
UPF1Q92900 TFDP2-215ENST00000489671 9857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.546e-7■■■■□ 19.4
UPF1Q92900 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.056e-7■■■■□ 19.4
UPF1Q92900 SZRD1-204ENST00000472351 791 ntTSL 421.23■□□□□ 0.992e-7■■■■□ 19.4
UPF1Q92900 PBX2-202ENST00000478678 1320 ntTSL 1 (best)32■■■□□ 2.712e-9■■■■□ 19.4
UPF1Q92900 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.142e-6■■■■□ 19.4
UPF1Q92900 AC068896.1-201ENST00000494792 3422 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.362e-6■■■■□ 19.4
UPF1Q92900 PQLC1-210ENST00000589452 704 ntTSL 541.56■■■■■ 4.247e-7■■■■□ 19.3
UPF1Q92900 PQLC1-214ENST00000593030 764 ntTSL 538.5■■■■□ 3.757e-7■■■■□ 19.3
UPF1Q92900 PQLC1-213ENST00000591964 856 ntTSL 336.62■■■■□ 3.457e-7■■■■□ 19.3
UPF1Q92900 SLC35A4-204ENST00000623481 683 ntTSL 1 (best) BASIC14.36□□□□□ -0.112e-10■■■■□ 19.3
UPF1Q92900 SDF4-204ENST00000459994 604 ntTSL 522.39■■□□□ 1.174e-8■■■■□ 19.3
UPF1Q92900 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.672e-7■■■■□ 19.3
UPF1Q92900 HMG20B-216ENST00000585900 741 ntTSL 326.19■■□□□ 1.782e-7■■■■□ 19.3
UPF1Q92900 HMG20B-213ENST00000488973 2434 ntTSL 1 (best)19.92■□□□□ 0.782e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC12.67□□□□□ -0.382e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.42e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC12.43□□□□□ -0.422e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-207ENST00000418951 5062 ntTSL 3 BASIC12.06□□□□□ -0.482e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-213ENST00000538149 4797 ntTSL 2 BASIC11.4□□□□□ -0.592e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-215ENST00000611738 4817 ntTSL 4 BASIC11.26□□□□□ -0.612e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-216ENST00000616863 4761 ntTSL 4 BASIC10.97□□□□□ -0.652e-7■■■■□ 19.3
UPF1Q92900 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC9.58□□□□□ -0.882e-7■■■■□ 19.3
UPF1Q92900 LINC00963-205ENST00000444184 1887 ntTSL 1 (best)22.05■■□□□ 1.123e-6■■■■□ 19.3
UPF1Q92900 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.94■□□□□ 0.943e-6■■■■□ 19.3
UPF1Q92900 EPB41-208ENST00000460378 5212 ntTSL 1 (best)12.55□□□□□ -0.41e-14■■■■□ 19.3
UPF1Q92900 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC9.31□□□□□ -0.921e-14■■■■□ 19.3
UPF1Q92900 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.971e-14■■■■□ 19.3
UPF1Q92900 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.091e-14■■■■□ 19.3
UPF1Q92900 CEP85-205ENST00000469609 2384 ntTSL 1 (best)15.42■□□□□ 0.067e-10■■■■□ 19.3
UPF1Q92900 CEP85-203ENST00000453146 2821 ntTSL 1 (best)13.14□□□□□ -0.317e-10■■■■□ 19.3
UPF1Q92900 CEP85-202ENST00000451429 4061 ntTSL 2 BASIC11.89□□□□□ -0.517e-10■■■■□ 19.3
UPF1Q92900 CEP85-206ENST00000476272 3507 ntTSL 29.02□□□□□ -0.977e-10■■■■□ 19.3
UPF1Q92900 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.087e-10■■■■□ 19.3
UPF1Q92900 FTO-210ENST00000612285 1852 ntTSL 512.29□□□□□ -0.443e-7■■■■□ 19.3
UPF1Q92900 FTO-221ENST00000637845 2472 ntTSL 59.95□□□□□ -0.823e-7■■■■□ 19.3
UPF1Q92900 FTO-222ENST00000637969 2889 ntTSL 5 BASIC8.93□□□□□ -0.983e-7■■■■□ 19.3
UPF1Q92900 FTO-213ENST00000636091 5323 ntTSL 58.57□□□□□ -1.043e-7■■■■□ 19.3
UPF1Q92900 FTO-201ENST00000268349 2799 ntTSL 1 (best)7.82□□□□□ -1.163e-7■■■■□ 19.3
UPF1Q92900 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.263e-7■■■■□ 19.3
UPF1Q92900 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.25□□□□□ -1.413e-7■■■■□ 19.3
UPF1Q92900 IRAK1-201ENST00000369973 2358 ntTSL 524.15■■□□□ 1.462e-8■■■■□ 19.3
UPF1Q92900 KLF6-201ENST00000173785 925 ntTSL 217.91■□□□□ 0.463e-13■■■■□ 19.3
UPF1Q92900 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC22.26■■□□□ 1.153e-7■■■■□ 19.3
UPF1Q92900 GNAI2-206ENST00000446079 2086 ntTSL 1 (best)17.22■□□□□ 0.353e-7■■■■□ 19.3
UPF1Q92900 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC16.21■□□□□ 0.193e-7■■■■□ 19.3
UPF1Q92900 GNAI2-210ENST00000490122 2445 ntTSL 215.63■□□□□ 0.093e-7■■■■□ 19.3
UPF1Q92900 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.081e-11■■■■□ 19.3
UPF1Q92900 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.32□□□□□ -0.121e-11■■■■□ 19.3
UPF1Q92900 SPAG9-208ENST00000509724 681 ntTSL 312.26□□□□□ -0.451e-11■■■■□ 19.3
UPF1Q92900 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.33■□□□□ 0.364e-11■■■■□ 19.3
UPF1Q92900 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.134e-11■■■■□ 19.3
Retrieved 100 of 15,879 protein–RNA pairs in 227 ms