Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
USP48Q86UV5 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
USP48Q86UV5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.37■■□□□ 1.33
USP48Q86UV5 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.37■■□□□ 1.33
USP48Q86UV5 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC23.37■■□□□ 1.33
USP48Q86UV5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
USP48Q86UV5 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC23.37■■□□□ 1.33
USP48Q86UV5 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
USP48Q86UV5 AC140113.3-201ENST00000605663 199 ntBASIC23.37■■□□□ 1.33
USP48Q86UV5 AL031432.5-201ENST00000641059 760 ntBASIC23.37■■□□□ 1.33
USP48Q86UV5 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
USP48Q86UV5 AC018445.3-201ENST00000624177 1945 ntBASIC23.37■■□□□ 1.33
USP48Q86UV5 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.37■■□□□ 1.33
USP48Q86UV5 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP48Q86UV5 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
USP48Q86UV5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.36■■□□□ 1.33
USP48Q86UV5 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC23.36■■□□□ 1.33
USP48Q86UV5 AL441883.1-201ENST00000566170 1045 ntBASIC23.36■■□□□ 1.33
USP48Q86UV5 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC23.36■■□□□ 1.33
USP48Q86UV5 AL023803.3-201ENST00000615559 522 ntBASIC23.36■■□□□ 1.33
USP48Q86UV5 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.36■■□□□ 1.33
USP48Q86UV5 HLA-A-209ENST00000638375 975 ntBASIC23.36■■□□□ 1.33
USP48Q86UV5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP48Q86UV5 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
USP48Q86UV5 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
USP48Q86UV5 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC23.35■■□□□ 1.33
USP48Q86UV5 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.35■■□□□ 1.33
USP48Q86UV5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC23.35■■□□□ 1.33
USP48Q86UV5 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
USP48Q86UV5 AL023973.1-201ENST00000624619 620 ntBASIC23.35■■□□□ 1.33
USP48Q86UV5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
USP48Q86UV5 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP48Q86UV5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
USP48Q86UV5 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC23.34■■□□□ 1.33
USP48Q86UV5 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.34■■□□□ 1.33
USP48Q86UV5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.34■■□□□ 1.33
USP48Q86UV5 AL691432.2-201ENST00000607222 2038 ntBASIC23.34■■□□□ 1.33
USP48Q86UV5 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC23.34■■□□□ 1.33
USP48Q86UV5 CD81-212ENST00000526072 1172 ntTSL 5 BASIC23.34■■□□□ 1.33
USP48Q86UV5 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.34■■□□□ 1.33
USP48Q86UV5 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC23.34■■□□□ 1.33
USP48Q86UV5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 AC018553.1-201ENST00000616682 1458 ntBASIC23.34■■□□□ 1.33
USP48Q86UV5 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.34■■□□□ 1.33
USP48Q86UV5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP48Q86UV5 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
USP48Q86UV5 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
USP48Q86UV5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
USP48Q86UV5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC23.33■■□□□ 1.33
USP48Q86UV5 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
USP48Q86UV5 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.33■■□□□ 1.33
USP48Q86UV5 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP48Q86UV5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.33■■□□□ 1.33
USP48Q86UV5 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC23.33■■□□□ 1.33
USP48Q86UV5 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC23.33■■□□□ 1.33
USP48Q86UV5 AC012313.10-201ENST00000623509 926 ntBASIC23.33■■□□□ 1.33
USP48Q86UV5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms