Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC25.46■■□□□ 1.67
USP54Q70EL1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC25.46■■□□□ 1.67
USP54Q70EL1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC25.46■■□□□ 1.67
USP54Q70EL1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC25.46■■□□□ 1.67
USP54Q70EL1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC25.46■■□□□ 1.67
USP54Q70EL1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC25.46■■□□□ 1.67
USP54Q70EL1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC25.46■■□□□ 1.67
USP54Q70EL1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC25.46■■□□□ 1.67
USP54Q70EL1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
USP54Q70EL1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
USP54Q70EL1 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
USP54Q70EL1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
USP54Q70EL1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
USP54Q70EL1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
USP54Q70EL1 CHCHD2P8-201ENST00000429873 447 ntBASIC25.45■■□□□ 1.67
USP54Q70EL1 ELP6-205ENST00000439305 880 ntTSL 2 BASIC25.45■■□□□ 1.67
USP54Q70EL1 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC25.45■■□□□ 1.67
USP54Q70EL1 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC25.45■■□□□ 1.67
USP54Q70EL1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC25.45■■□□□ 1.67
USP54Q70EL1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC25.45■■□□□ 1.67
USP54Q70EL1 AC016734.2-201ENST00000624325 1377 ntBASIC25.45■■□□□ 1.67
USP54Q70EL1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC25.45■■□□□ 1.67
USP54Q70EL1 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC25.45■■□□□ 1.66
USP54Q70EL1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP54Q70EL1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USP54Q70EL1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USP54Q70EL1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP54Q70EL1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
USP54Q70EL1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC25.45■■□□□ 1.66
USP54Q70EL1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
USP54Q70EL1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC25.45■■□□□ 1.66
USP54Q70EL1 AL391807.1-203ENST00000604392 2365 ntBASIC25.45■■□□□ 1.66
USP54Q70EL1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
USP54Q70EL1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC25.45■■□□□ 1.66
USP54Q70EL1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP54Q70EL1 AL137060.1-201ENST00000618151 2648 ntBASIC25.44■■□□□ 1.66
USP54Q70EL1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC25.44■■□□□ 1.66
USP54Q70EL1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
USP54Q70EL1 AL121672.3-201ENST00000608644 468 ntBASIC25.44■■□□□ 1.66
USP54Q70EL1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
USP54Q70EL1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC25.44■■□□□ 1.66
USP54Q70EL1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP54Q70EL1 AL109659.2-201ENST00000606809 1674 ntBASIC25.44■■□□□ 1.66
USP54Q70EL1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC25.44■■□□□ 1.66
USP54Q70EL1 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC25.43■■□□□ 1.66
USP54Q70EL1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC25.43■■□□□ 1.66
USP54Q70EL1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC25.43■■□□□ 1.66
USP54Q70EL1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC25.43■■□□□ 1.66
USP54Q70EL1 TK1-205ENST00000590862 642 ntTSL 3 BASIC25.43■■□□□ 1.66
USP54Q70EL1 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 KATNBL1P6-202ENST00000562413 1466 ntBASIC25.43■■□□□ 1.66
USP54Q70EL1 RCC2P3-201ENST00000418112 1537 ntBASIC25.43■■□□□ 1.66
USP54Q70EL1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC25.43■■□□□ 1.66
USP54Q70EL1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC25.43■■□□□ 1.66
USP54Q70EL1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC25.43■■□□□ 1.66
USP54Q70EL1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC25.43■■□□□ 1.66
USP54Q70EL1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
USP54Q70EL1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC25.42■■□□□ 1.66
USP54Q70EL1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC25.42■■□□□ 1.66
USP54Q70EL1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC25.42■■□□□ 1.66
USP54Q70EL1 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC25.42■■□□□ 1.66
USP54Q70EL1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC25.42■■□□□ 1.66
USP54Q70EL1 IFNL4P1-201ENST00000607083 540 ntBASIC25.42■■□□□ 1.66
USP54Q70EL1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.42■■□□□ 1.66
USP54Q70EL1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
USP54Q70EL1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
USP54Q70EL1 AC104390.1-201ENST00000555663 520 ntBASIC25.42■■□□□ 1.66
USP54Q70EL1 AC010240.3-201ENST00000607688 395 ntBASIC25.42■■□□□ 1.66
USP54Q70EL1 AC092119.3-201ENST00000612618 583 ntBASIC25.42■■□□□ 1.66
USP54Q70EL1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC25.42■■□□□ 1.66
USP54Q70EL1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 AC125437.2-201ENST00000625180 2167 ntBASIC25.41■■□□□ 1.66
USP54Q70EL1 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms