Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC88AQ3V6T2 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.35■■□□□ 1.33
CCDC88AQ3V6T2 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 LINC00167-201ENST00000530583 1419 ntBASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC88AQ3V6T2 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 SPEG-225ENST00000617028 815 ntTSL 5 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
CCDC88AQ3V6T2 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CCDC88AQ3V6T2 USP48-205ENST00000421625 2818 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 SEC1P-202ENST00000473944 940 ntBASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 AL162741.1-201ENST00000565563 1558 ntBASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CCDC88AQ3V6T2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms