Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMK1P53667 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMK1P53667 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMK1P53667 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
LIMK1P53667 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.85■□□□□ 0.61
LIMK1P53667 BX276092.5-203ENST00000456199 560 ntBASIC18.85■□□□□ 0.61
LIMK1P53667 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.85■□□□□ 0.61
LIMK1P53667 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 AC104692.2-201ENST00000603054 253 ntBASIC18.85■□□□□ 0.61
LIMK1P53667 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
LIMK1P53667 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMK1P53667 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMK1P53667 AL020996.1-203ENST00000536896 2307 ntBASIC18.85■□□□□ 0.61
LIMK1P53667 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
LIMK1P53667 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.85■□□□□ 0.61
LIMK1P53667 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIMK1P53667 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMK1P53667 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMK1P53667 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.84■□□□□ 0.61
LIMK1P53667 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMK1P53667 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.84■□□□□ 0.61
LIMK1P53667 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.84■□□□□ 0.61
LIMK1P53667 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LIMK1P53667 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
LIMK1P53667 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIMK1P53667 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMK1P53667 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.83■□□□□ 0.61
LIMK1P53667 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIMK1P53667 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIMK1P53667 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 AC106795.1-205ENST00000512851 1056 ntBASIC18.83■□□□□ 0.6
LIMK1P53667 AL160286.2-201ENST00000567150 934 ntBASIC18.83■□□□□ 0.6
LIMK1P53667 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LIMK1P53667 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 AL031008.1-201ENST00000619963 541 ntBASIC18.83■□□□□ 0.6
LIMK1P53667 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LIMK1P53667 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
LIMK1P53667 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
LIMK1P53667 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMK1P53667 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMK1P53667 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMK1P53667 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMK1P53667 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMK1P53667 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.82■□□□□ 0.6
LIMK1P53667 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.82■□□□□ 0.6
LIMK1P53667 AC011498.5-201ENST00000592027 486 ntBASIC18.82■□□□□ 0.6
LIMK1P53667 AC117500.6-201ENST00000624871 588 ntBASIC18.82■□□□□ 0.6
LIMK1P53667 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIMK1P53667 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms