Protein–RNA interactions for Protein: P48539

PCP4, Calmodulin regulator protein PCP4, humanhuman

Predictions only

Length 62 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCP4P48539 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
PCP4P48539 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
PCP4P48539 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.21□□□□□ -0.3
PCP4P48539 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC13.21□□□□□ -0.3
PCP4P48539 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
PCP4P48539 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.3
PCP4P48539 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
PCP4P48539 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
PCP4P48539 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 AL162377.1-201ENST00000618844 1793 ntBASIC13.2□□□□□ -0.3
PCP4P48539 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
PCP4P48539 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
PCP4P48539 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.2□□□□□ -0.3
PCP4P48539 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
PCP4P48539 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
PCP4P48539 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC13.19□□□□□ -0.3
PCP4P48539 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
PCP4P48539 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.19□□□□□ -0.3
PCP4P48539 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
PCP4P48539 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.19□□□□□ -0.3
PCP4P48539 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 LINC01465-201ENST00000408887 1940 ntBASIC13.19□□□□□ -0.3
PCP4P48539 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ME2-206ENST00000638410 2289 ntTSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 ME2-210ENST00000639255 2262 ntTSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
PCP4P48539 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
PCP4P48539 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
PCP4P48539 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC13.18□□□□□ -0.3
PCP4P48539 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.18□□□□□ -0.3
PCP4P48539 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.18□□□□□ -0.3
PCP4P48539 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.18□□□□□ -0.3
PCP4P48539 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC13.18□□□□□ -0.3
PCP4P48539 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
PCP4P48539 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms