Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNFP41002 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNFP41002 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCNFP41002 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNFP41002 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCNFP41002 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNFP41002 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.18■□□□□ 0.66
CCNFP41002 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.18■□□□□ 0.66
CCNFP41002 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.18■□□□□ 0.66
CCNFP41002 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 AP006587.1-201ENST00000534129 1502 ntBASIC19.18■□□□□ 0.66
CCNFP41002 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCNFP41002 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNFP41002 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCNFP41002 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.17■□□□□ 0.66
CCNFP41002 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.17■□□□□ 0.66
CCNFP41002 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.17■□□□□ 0.66
CCNFP41002 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.17■□□□□ 0.66
CCNFP41002 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.17■□□□□ 0.66
CCNFP41002 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.17■□□□□ 0.66
CCNFP41002 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.17■□□□□ 0.66
CCNFP41002 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 MTDHP1-201ENST00000605323 784 ntBASIC19.17■□□□□ 0.66
CCNFP41002 AC073648.6-201ENST00000641589 218 ntBASIC19.17■□□□□ 0.66
CCNFP41002 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCNFP41002 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCNFP41002 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.17■□□□□ 0.66
CCNFP41002 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNFP41002 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.16■□□□□ 0.66
CCNFP41002 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCNFP41002 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
CCNFP41002 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCNFP41002 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCNFP41002 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 TSPY20P-201ENST00000450910 630 ntBASIC19.16■□□□□ 0.66
CCNFP41002 AC128676.1-201ENST00000454392 318 ntBASIC19.16■□□□□ 0.66
CCNFP41002 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.16■□□□□ 0.66
CCNFP41002 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.16■□□□□ 0.66
CCNFP41002 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.16■□□□□ 0.66
CCNFP41002 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.16■□□□□ 0.66
CCNFP41002 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.16■□□□□ 0.66
CCNFP41002 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 AC120498.9-201ENST00000339021 3867 ntBASIC19.16■□□□□ 0.66
CCNFP41002 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.16■□□□□ 0.66
CCNFP41002 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCNFP41002 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CCNFP41002 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNFP41002 BICD1-207ENST00000551848 1962 ntBASIC19.15■□□□□ 0.66
CCNFP41002 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNFP41002 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNFP41002 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCNFP41002 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNFP41002 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCNFP41002 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.15■□□□□ 0.66
CCNFP41002 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCNFP41002 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CCNFP41002 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.15■□□□□ 0.66
CCNFP41002 YBX1P10-201ENST00000444752 975 ntBASIC19.15■□□□□ 0.66
CCNFP41002 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.15■□□□□ 0.66
CCNFP41002 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms