Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.48■□□□□ 0.39
MSX1P28360 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
MSX1P28360 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
MSX1P28360 AC005521.1-201ENST00000393351 872 ntBASIC17.48■□□□□ 0.39
MSX1P28360 MIR1238-201ENST00000408483 83 ntBASIC17.48■□□□□ 0.39
MSX1P28360 AC113347.1-201ENST00000413321 391 ntBASIC17.48■□□□□ 0.39
MSX1P28360 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.48■□□□□ 0.39
MSX1P28360 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.48■□□□□ 0.39
MSX1P28360 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
MSX1P28360 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
MSX1P28360 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
MSX1P28360 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.48■□□□□ 0.39
MSX1P28360 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
MSX1P28360 AL032819.2-201ENST00000624543 2162 ntBASIC17.47■□□□□ 0.39
MSX1P28360 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 AC005332.7-201ENST00000614046 2005 ntBASIC17.47■□□□□ 0.39
MSX1P28360 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.47■□□□□ 0.39
MSX1P28360 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 B3GAT3P1-201ENST00000471720 806 ntBASIC17.47■□□□□ 0.39
MSX1P28360 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 DGCR10-201ENST00000609839 495 ntBASIC17.47■□□□□ 0.39
MSX1P28360 AC011298.2-201ENST00000617989 482 ntBASIC17.47■□□□□ 0.39
MSX1P28360 LINC01568-207ENST00000641790 1380 ntBASIC17.47■□□□□ 0.39
MSX1P28360 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
MSX1P28360 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.47■□□□□ 0.39
MSX1P28360 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
MSX1P28360 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX1P28360 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
MSX1P28360 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX1P28360 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX1P28360 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.46■□□□□ 0.39
MSX1P28360 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX1P28360 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX1P28360 AC091390.4-202ENST00000476426 537 ntBASIC17.46■□□□□ 0.39
MSX1P28360 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.46■□□□□ 0.39
MSX1P28360 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.46■□□□□ 0.39
MSX1P28360 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.46■□□□□ 0.39
MSX1P28360 NAPSB-206ENST00000562112 1266 ntBASIC17.46■□□□□ 0.39
MSX1P28360 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
MSX1P28360 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.46■□□□□ 0.39
MSX1P28360 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.46■□□□□ 0.39
MSX1P28360 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.46■□□□□ 0.39
MSX1P28360 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
MSX1P28360 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
MSX1P28360 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
MSX1P28360 AC141586.3-201ENST00000562166 1838 ntBASIC17.45■□□□□ 0.38
MSX1P28360 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX1P28360 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
MSX1P28360 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
MSX1P28360 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX1P28360 FAM207BP-201ENST00000447172 505 ntBASIC17.45■□□□□ 0.38
MSX1P28360 AC011506.1-201ENST00000474329 610 ntBASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms