Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.58□□□□□ -0.086e-7■■□□□ 14.3
YBX3P16989 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.421e-7■■□□□ 14.3
YBX3P16989 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.78■□□□□ 0.65e-7■■□□□ 14.3
YBX3P16989 HADHA-201ENST00000380649 3037 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.652e-9■■□□□ 14.3
YBX3P16989 HSF1-214ENST00000614796 1724 ntTSL 522.4■■□□□ 1.185e-7■■□□□ 14.3
YBX3P16989 KIAA1191-211ENST00000533553 560 ntTSL 3 BASIC16.13■□□□□ 0.173e-7■■□□□ 14.3
YBX3P16989 PSMC5-217ENST00000584536 804 ntTSL 516.18■□□□□ 0.182e-8■■□□□ 14.3
YBX3P16989 PSMC5-204ENST00000579031 772 ntTSL 215.29■□□□□ 0.042e-8■■□□□ 14.3
YBX3P16989 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.469e-7■■□□□ 14.3
YBX3P16989 FLII-218ENST00000577485 555 ntTSL 514.86□□□□□ -0.032e-6■■□□□ 14.3
YBX3P16989 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.754e-7■■□□□ 14.3
YBX3P16989 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.98■■□□□ 1.114e-7■■□□□ 14.3
YBX3P16989 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.82■□□□□ 0.924e-7■■□□□ 14.3
YBX3P16989 UBE2M-204ENST00000596985 349 ntTSL 39.72□□□□□ -0.852e-10■■□□□ 14.3
YBX3P16989 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC24.41■■□□□ 1.52e-8■■□□□ 14.3
YBX3P16989 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.61e-14■■□□□ 14.3
YBX3P16989 EIF4A2-204ENST00000429589 1005 ntTSL 58.9□□□□□ -0.981e-14■■□□□ 14.3
YBX3P16989 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)8.54□□□□□ -1.041e-14■■□□□ 14.3
YBX3P16989 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)7.64□□□□□ -1.191e-14■■□□□ 14.3
YBX3P16989 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.261e-14■■□□□ 14.3
YBX3P16989 EIF4A2-202ENST00000425053 1977 ntTSL 56.82□□□□□ -1.321e-14■■□□□ 14.3
YBX3P16989 EIF4A2-219ENST00000485101 5327 ntTSL 54.32□□□□□ -1.721e-14■■□□□ 14.3
YBX3P16989 PPP1R2-203ENST00000438848 839 ntTSL 522.97■■□□□ 1.275e-7■■□□□ 14.3
YBX3P16989 PPP1R2-201ENST00000413183 706 ntTSL 515.93■□□□□ 0.145e-7■■□□□ 14.3
YBX3P16989 PPP1R2-206ENST00000618156 3450 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.895e-7■■□□□ 14.3
YBX3P16989 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.721e-88■■□□□ 14.3
YBX3P16989 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.431e-88■■□□□ 14.3
YBX3P16989 RPLP0-226ENST00000552461 2591 ntTSL 216.47■□□□□ 0.231e-88■■□□□ 14.3
YBX3P16989 RPLP0-205ENST00000546989 993 ntTSL 5 BASIC14.89□□□□□ -0.031e-88■■□□□ 14.3
YBX3P16989 RPLP0-202ENST00000313104 912 ntTSL 1 (best) BASIC14.5□□□□□ -0.091e-88■■□□□ 14.3
YBX3P16989 RPLP0-214ENST00000549098 1106 ntTSL 214.5□□□□□ -0.091e-88■■□□□ 14.3
YBX3P16989 RPLP0-203ENST00000392514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.231e-88■■□□□ 14.3
YBX3P16989 RPLP0-221ENST00000551258 966 ntTSL 513.25□□□□□ -0.291e-88■■□□□ 14.3
YBX3P16989 S100PBP-207ENST00000482212 706 ntTSL 230.84■■■□□ 2.531e-11■■□□□ 14.3
YBX3P16989 S100PBP-215ENST00000531123 1688 ntTSL 522.8■■□□□ 1.241e-11■■□□□ 14.3
YBX3P16989 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.211e-11■■□□□ 14.3
YBX3P16989 S100PBP-210ENST00000526230 573 ntTSL 413.4□□□□□ -0.261e-11■■□□□ 14.3
YBX3P16989 S100PBP-202ENST00000373475 4322 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.51e-11■■□□□ 14.3
YBX3P16989 S100PBP-201ENST00000356689 3583 ntTSL 1 (best)10.76□□□□□ -0.691e-11■■□□□ 14.3
YBX3P16989 S100PBP-214ENST00000530710 725 ntTSL 49.83□□□□□ -0.841e-11■■□□□ 14.3
YBX3P16989 S100PBP-216ENST00000531256 551 ntTSL 48.62□□□□□ -1.031e-11■■□□□ 14.3
YBX3P16989 CIAPIN1-206ENST00000565786 641 ntTSL 315.64■□□□□ 0.093e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-214ENST00000569979 896 ntTSL 2 BASIC13.74□□□□□ -0.213e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-211ENST00000568940 1137 ntTSL 3 BASIC13.68□□□□□ -0.223e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-208ENST00000566284 1165 ntTSL 213.08□□□□□ -0.323e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-205ENST00000565368 851 ntTSL 311.92□□□□□ -0.53e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-202ENST00000563341 505 ntTSL 310.63□□□□□ -0.713e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-215ENST00000570000 994 ntTSL 39.71□□□□□ -0.863e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-212ENST00000569246 910 ntTSL 39.17□□□□□ -0.943e-6■■□□□ 14.3
YBX3P16989 CIAPIN1-210ENST00000567751 328 ntTSL 55.51□□□□□ -1.533e-6■■□□□ 14.3
YBX3P16989 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.55■□□□□ 0.881e-7■■□□□ 14.3
YBX3P16989 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC20.05■□□□□ 0.81e-7■■□□□ 14.3
YBX3P16989 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.571e-7■■□□□ 14.3
YBX3P16989 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.452e-11■■□□□ 14.3
YBX3P16989 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.082e-6■■□□□ 14.3
YBX3P16989 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.172e-6■■□□□ 14.3
YBX3P16989 RPLP0-224ENST00000551914 402 ntTSL 312.5□□□□□ -0.411e-13■■□□□ 14.3
YBX3P16989 AC074091.1-201ENST00000505973 1741 ntTSL 2 BASIC14.75□□□□□ -0.051e-8■■□□□ 14.3
YBX3P16989 OGDH-203ENST00000439616 2962 ntTSL 2 BASIC15.24■□□□□ 0.033e-6■■□□□ 14.3
YBX3P16989 OGDH-201ENST00000222673 4181 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.623e-6■■□□□ 14.3
YBX3P16989 OGDH-205ENST00000444676 3309 ntTSL 5 BASIC11.09□□□□□ -0.633e-6■■□□□ 14.3
YBX3P16989 OGDH-207ENST00000449767 3479 ntAPPRIS ALT1 TSL 2 BASIC10.06□□□□□ -0.83e-6■■□□□ 14.3
YBX3P16989 OGDH-206ENST00000447398 3474 ntTSL 5 BASIC9.86□□□□□ -0.833e-6■■□□□ 14.3
YBX3P16989 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC9.22□□□□□ -0.933e-6■■□□□ 14.3
YBX3P16989 TRAF4-213ENST00000578917 484 ntTSL 48.49□□□□□ -1.056e-10■■□□□ 14.3
YBX3P16989 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.85■□□□□ 0.931e-9■■□□□ 14.3
YBX3P16989 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.12■□□□□ 0.491e-9■■□□□ 14.3
YBX3P16989 CCNK-205ENST00000555842 811 ntTSL 514.85□□□□□ -0.039e-7■■□□□ 14.3
YBX3P16989 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.121e-7■■□□□ 14.3
YBX3P16989 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.035e-7■■□□□ 14.2
YBX3P16989 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC10.25□□□□□ -0.775e-7■■□□□ 14.2
YBX3P16989 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.391e-9■■□□□ 14.2
YBX3P16989 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)12.62□□□□□ -0.391e-9■■□□□ 14.2
YBX3P16989 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.531e-9■■□□□ 14.2
YBX3P16989 LSM2-209ENST00000470083 641 ntTSL 217.53■□□□□ 0.42e-9■■□□□ 14.2
YBX3P16989 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.32e-9■■□□□ 14.2
YBX3P16989 LSM2-212ENST00000477182 767 ntTSL 316.25■□□□□ 0.192e-9■■□□□ 14.2
YBX3P16989 LSM2-214ENST00000493387 767 ntTSL 514.19□□□□□ -0.142e-9■■□□□ 14.2
YBX3P16989 LSM2-210ENST00000470086 713 ntTSL 212.37□□□□□ -0.432e-9■■□□□ 14.2
YBX3P16989 LSM2-213ENST00000491421 820 ntTSL 311.09□□□□□ -0.632e-9■■□□□ 14.2
YBX3P16989 EXOC4-208ENST00000468932 753 ntTSL 315.64■□□□□ 0.097e-7■■□□□ 14.2
YBX3P16989 HYOU1-215ENST00000543287 2464 ntTSL 218.18■□□□□ 0.53e-7■■□□□ 14.2
YBX3P16989 HYOU1-207ENST00000530473 2023 ntTSL 517.45■□□□□ 0.383e-7■■□□□ 14.2
YBX3P16989 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC22.02■■□□□ 1.112e-7■■□□□ 14.2
YBX3P16989 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC17.3■□□□□ 0.362e-7■■□□□ 14.2
YBX3P16989 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.54■□□□□ 0.242e-7■■□□□ 14.2
YBX3P16989 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.162e-7■■□□□ 14.2
YBX3P16989 GFI1B-201ENST00000339463 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.522e-7■■□□□ 14.2
YBX3P16989 TMEM106B-204ENST00000442107 496 ntTSL 326.46■■□□□ 1.835e-7■■□□□ 14.2
YBX3P16989 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.53■■□□□ 1.684e-16■■□□□ 14.2
YBX3P16989 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24.18■■□□□ 1.464e-16■■□□□ 14.2
YBX3P16989 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.44e-16■■□□□ 14.2
YBX3P16989 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.5■■□□□ 1.354e-16■■□□□ 14.2
YBX3P16989 NDUFB9-205ENST00000518657 672 ntTSL 29.54□□□□□ -0.884e-16■■□□□ 14.2
YBX3P16989 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.95□□□□□ -1.468e-7■■□□□ 14.2
YBX3P16989 MACF1-205ENST00000372925 14496 ntTSL 55.87□□□□□ -1.478e-7■■□□□ 14.2
YBX3P16989 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.8□□□□□ -1.648e-7■■□□□ 14.2
YBX3P16989 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.748e-7■■□□□ 14.2
YBX3P16989 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.798e-7■■□□□ 14.2
YBX3P16989 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.53□□□□□ -1.848e-7■■□□□ 14.2
Retrieved 100 of 29,075 protein–RNA pairs in 503.8 ms