Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TNFP01375 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
TNFP01375 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TNFP01375 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TNFP01375 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TNFP01375 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.64■□□□□ 0.57
TNFP01375 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.64■□□□□ 0.57
TNFP01375 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
TNFP01375 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.64■□□□□ 0.57
TNFP01375 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.64■□□□□ 0.57
TNFP01375 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.64■□□□□ 0.57
TNFP01375 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TNFP01375 Z82202.1-201ENST00000623446 1880 ntBASIC18.64■□□□□ 0.57
TNFP01375 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.64■□□□□ 0.57
TNFP01375 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFP01375 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
TNFP01375 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TNFP01375 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TNFP01375 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFP01375 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFP01375 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TNFP01375 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.63■□□□□ 0.57
TNFP01375 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 HOMER2P1-201ENST00000455653 964 ntBASIC18.63■□□□□ 0.57
TNFP01375 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TNFP01375 AL023973.1-201ENST00000624619 620 ntBASIC18.63■□□□□ 0.57
TNFP01375 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFP01375 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TNFP01375 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TNFP01375 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TNFP01375 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFP01375 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.62■□□□□ 0.57
TNFP01375 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.62■□□□□ 0.57
TNFP01375 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.62■□□□□ 0.57
TNFP01375 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.62■□□□□ 0.57
TNFP01375 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TNFP01375 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.62■□□□□ 0.57
TNFP01375 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.62■□□□□ 0.57
TNFP01375 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFP01375 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TNFP01375 PCDHAC2-203ENST00000615316 3011 ntBASIC18.62■□□□□ 0.57
TNFP01375 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TNFP01375 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFP01375 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.61■□□□□ 0.57
TNFP01375 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.61■□□□□ 0.57
TNFP01375 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.61■□□□□ 0.57
TNFP01375 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.61■□□□□ 0.57
TNFP01375 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.61■□□□□ 0.57
TNFP01375 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.61■□□□□ 0.57
TNFP01375 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TNFP01375 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms