Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 AL512353.2-201ENST00000448759 1962 ntBASIC18.66■□□□□ 0.58
SIX3O95343 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX3O95343 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.66■□□□□ 0.58
SIX3O95343 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.66■□□□□ 0.58
SIX3O95343 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
SIX3O95343 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX3O95343 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SIX3O95343 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
SIX3O95343 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SIX3O95343 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.66■□□□□ 0.58
SIX3O95343 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 WIZP1-201ENST00000531444 2299 ntBASIC18.65■□□□□ 0.58
SIX3O95343 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 AC026366.1-201ENST00000488803 879 ntBASIC18.65■□□□□ 0.58
SIX3O95343 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.65■□□□□ 0.58
SIX3O95343 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.65■□□□□ 0.58
SIX3O95343 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX3O95343 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.65■□□□□ 0.58
SIX3O95343 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.65■□□□□ 0.58
SIX3O95343 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.65■□□□□ 0.58
SIX3O95343 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SIX3O95343 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
SIX3O95343 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.58
SIX3O95343 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX3O95343 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX3O95343 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX3O95343 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SIX3O95343 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.64■□□□□ 0.58
SIX3O95343 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.64■□□□□ 0.57
SIX3O95343 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SIX3O95343 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 KRT17P3-201ENST00000420566 1262 ntBASIC18.64■□□□□ 0.57
SIX3O95343 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX3O95343 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 AL160286.2-201ENST00000567150 934 ntBASIC18.64■□□□□ 0.57
SIX3O95343 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX3O95343 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
SIX3O95343 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.64■□□□□ 0.57
SIX3O95343 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 AC093525.10-201ENST00000625130 1569 ntBASIC18.64■□□□□ 0.57
SIX3O95343 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.64■□□□□ 0.57
SIX3O95343 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SIX3O95343 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
SIX3O95343 AC007613.1-201ENST00000572811 2597 ntBASIC18.63■□□□□ 0.57
SIX3O95343 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX3O95343 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SIX3O95343 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX3O95343 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX3O95343 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.63■□□□□ 0.57
SIX3O95343 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX3O95343 AC004264.1-201ENST00000608354 794 ntBASIC18.63■□□□□ 0.57
SIX3O95343 AL023875.1-201ENST00000640777 796 ntBASIC18.63■□□□□ 0.57
SIX3O95343 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.63■□□□□ 0.57
SIX3O95343 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX3O95343 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX3O95343 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX3O95343 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms