Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.11■□□□□ 0.49
PROM1O43490 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.11■□□□□ 0.49
PROM1O43490 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PROM1O43490 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 Z99916.2-201ENST00000604037 246 ntBASIC18.11■□□□□ 0.49
PROM1O43490 CD177P1-201ENST00000606252 935 ntBASIC18.11■□□□□ 0.49
PROM1O43490 AP001412.1-201ENST00000608405 714 ntBASIC18.11■□□□□ 0.49
PROM1O43490 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PROM1O43490 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PROM1O43490 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.11■□□□□ 0.49
PROM1O43490 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.11■□□□□ 0.49
PROM1O43490 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
PROM1O43490 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PROM1O43490 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.11■□□□□ 0.49
PROM1O43490 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.1■□□□□ 0.49
PROM1O43490 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.1■□□□□ 0.49
PROM1O43490 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.1■□□□□ 0.49
PROM1O43490 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 FAM197Y1-201ENST00000421178 764 ntBASIC18.1■□□□□ 0.49
PROM1O43490 TSPY21P-201ENST00000433481 731 ntBASIC18.1■□□□□ 0.49
PROM1O43490 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.1■□□□□ 0.49
PROM1O43490 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PROM1O43490 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.1■□□□□ 0.49
PROM1O43490 AC026271.3-201ENST00000571884 352 ntBASIC18.1■□□□□ 0.49
PROM1O43490 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.1■□□□□ 0.49
PROM1O43490 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.1■□□□□ 0.49
PROM1O43490 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
PROM1O43490 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
PROM1O43490 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PROM1O43490 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 AL161938.1-201ENST00000569833 2180 ntBASIC18.1■□□□□ 0.49
PROM1O43490 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PROM1O43490 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 AC138932.1-201ENST00000534164 6830 ntBASIC18.09■□□□□ 0.49
PROM1O43490 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.09■□□□□ 0.49
PROM1O43490 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.09■□□□□ 0.49
PROM1O43490 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.09■□□□□ 0.49
PROM1O43490 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.09■□□□□ 0.49
PROM1O43490 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.09■□□□□ 0.49
PROM1O43490 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.09■□□□□ 0.49
PROM1O43490 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PROM1O43490 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.09■□□□□ 0.49
PROM1O43490 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 AL049637.2-201ENST00000641778 930 ntBASIC18.09■□□□□ 0.49
PROM1O43490 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PROM1O43490 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PROM1O43490 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
PROM1O43490 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PROM1O43490 RCC2P6-201ENST00000526625 1557 ntBASIC18.08■□□□□ 0.49
PROM1O43490 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.08■□□□□ 0.49
PROM1O43490 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PROM1O43490 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PROM1O43490 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.49
PROM1O43490 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.08■□□□□ 0.49
PROM1O43490 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
PROM1O43490 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PROM1O43490 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
PROM1O43490 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.08■□□□□ 0.49
PROM1O43490 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PROM1O43490 IRX1P1-201ENST00000438849 1838 ntBASIC18.08■□□□□ 0.48
PROM1O43490 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.08■□□□□ 0.48
PROM1O43490 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PROM1O43490 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.08■□□□□ 0.48
PROM1O43490 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PROM1O43490 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PROM1O43490 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
PROM1O43490 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms