Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AL137014.1-201ENST00000420490 1226 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 HMGB3P22-202ENST00000451823 572 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 Y_RNA.680-201ENST00000516441 93 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 RNU6-1003P-201ENST00000517099 105 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 RNU6-1314P-201ENST00000517139 104 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AP000790.1-201ENST00000528891 737 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 RGS4-209ENST00000531057 544 ntTSL 4 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AC010525.2-201ENST00000590920 195 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AC233309.1-201ENST00000619522 751 ntBASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.71□□□□□ -1.49
COL17A1Q9UMD9 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 RNU4-35P-201ENST00000362588 141 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 RNA5SP240-201ENST00000365355 128 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 RNU6-444P-201ENST00000383988 108 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AL445529.1-201ENST00000398713 389 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 RPL7P25-201ENST00000404151 721 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 HNRNPDLP1-201ENST00000412834 550 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC083798.1-201ENST00000472671 131 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC012181.1-201ENST00000479895 423 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 MTCO3P23-201ENST00000561363 289 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 SULT1C2P1-202ENST00000562418 459 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 HMGN1P30-201ENST00000589286 268 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 AL451007.1-201ENST00000595491 289 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 MIR98-201ENST00000606724 119 ntBASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.71□□□□□ -1.5
COL17A1Q9UMD9 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 AC118273.1-201ENST00000525324 3006 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 SMG1P4-204ENST00000523028 4131 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 MAPK10-320ENST00000641462 6696 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 RNU6-223P-201ENST00000362830 107 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 RNU6-289P-201ENST00000364093 107 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 SNORD113-1-201ENST00000365321 69 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 RNU6-1032P-201ENST00000384100 107 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 AC068050.1-201ENST00000394891 380 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 MRPS31P2-201ENST00000451581 518 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 RPL12P25-201ENST00000455592 494 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 MIR3133-201ENST00000583157 78 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 APOOP1-201ENST00000604695 592 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 AP006248.2-201ENST00000623309 592 ntBASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.7□□□□□ -1.5
COL17A1Q9UMD9 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 SDAD1P2-201ENST00000441308 2028 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 RNU6-282P-201ENST00000365357 103 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 Y_RNA.512-201ENST00000384518 102 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 Y_RNA.555-201ENST00000384673 110 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 DBIP2-201ENST00000419076 262 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 PIGPP3-201ENST00000425307 415 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 RPL31P35-201ENST00000431058 377 ntBASIC5.69□□□□□ -1.5
COL17A1Q9UMD9 FTLP19-201ENST00000433300 394 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms