RNA–Protein interactions for RNA: ENST00000452448.6

EPHA3-202, Transcript of EPH receptor A3, humanhuman

TSL 1 (best) BASIC

Gene EPHA3, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3-202ENST00000452448 AEBP2Q6ZN18 517 aaPredicted RBP12.53□□□□□ -0.4
EPHA3-202ENST00000452448 CHIC1Q5VXU3 224 aa12.2□□□□□ -0.46
EPHA3-202ENST00000452448 PHF23Q9BUL5 403 aaPredicted RBP11.07□□□□□ -0.64
EPHA3-202ENST00000452448 SENP3Q9H4L4 574 aaPredicted RBP10.12□□□□□ -0.79
EPHA3-202ENST00000452448 PLPPR3Q6T4P5 718 aa9.95□□□□□ -0.82
EPHA3-202ENST00000452448 ADRA2BP18089 450 aa9.83□□□□□ -0.84
EPHA3-202ENST00000452448 PPP6R1Q9UPN7 881 aa9.77□□□□□ -0.85
EPHA3-202ENST00000452448 SLC24A1O60721 1099 aa9.72□□□□□ -0.85
EPHA3-202ENST00000452448 FOXD1Q16676 465 aa9.67□□□□□ -0.86
EPHA3-202ENST00000452448 KCNA4P22459 653 aa9.35□□□□□ -0.91
EPHA3-202ENST00000452448 EHMT2Q96KQ7 1210 aa9.27□□□□□ -0.93
EPHA3-202ENST00000452448 MYT1Q01538 1121 aa9.18□□□□□ -0.94
EPHA3-202ENST00000452448 PELP1Q8IZL8 1130 aaKnown RBP9.15□□□□□ -0.94
EPHA3-202ENST00000452448 PIAS4Q8N2W9 510 aaPredicted RBP9.13□□□□□ -0.95
EPHA3-202ENST00000452448 TTBK1Q5TCY1 1321 aaPredicted RBP8.99□□□□□ -0.97
EPHA3-202ENST00000452448 PPP4R3CPQ6ZMV5 832 aa8.95□□□□□ -0.98
EPHA3-202ENST00000452448 PRKCSHP14314 528 aaPredicted RBP8.94□□□□□ -0.98
EPHA3-202ENST00000452448 RTN4Q9NQC3 1192 aaKnown RBP8.87□□□□□ -0.99
EPHA3-202ENST00000452448 MAPK8IP2Q13387 824 aaPredicted RBP8.81□□□□□ -1
EPHA3-202ENST00000452448 CSRNP3Q8WYN3 585 aa8.81□□□□□ -1
EPHA3-202ENST00000452448 APLP2Q06481 763 aa8.78□□□□□ -1
EPHA3-202ENST00000452448 NPM3O75607 178 aaKnown RBP8.77□□□□□ -1.01
EPHA3-202ENST00000452448 DAXXQ9UER7 740 aaPredicted RBP8.77□□□□□ -1.01
EPHA3-202ENST00000452448 ERICH6Q7L0X2 663 aa8.75□□□□□ -1.01
EPHA3-202ENST00000452448 SLC4A1APQ9BWU0 796 aaKnown RBP8.74□□□□□ -1.01
EPHA3-202ENST00000452448 ZBTB22O15209 634 aa8.73□□□□□ -1.01
EPHA3-202ENST00000452448 NCBP3Q53F19 620 aaKnown RBP8.64□□□□□ -1.03
EPHA3-202ENST00000452448 AMER1Q5JTC6 1135 aaPredicted RBP8.61□□□□□ -1.03
EPHA3-202ENST00000452448 POTEDQ86YR6 584 aa8.56□□□□□ -1.04
EPHA3-202ENST00000452448 CNKSR2Q8WXI2 1034 aa8.46□□□□□ -1.05
EPHA3-202ENST00000452448 MSH5O43196 834 aa8.39□□□□□ -1.07
EPHA3-202ENST00000452448 BCL11AQ9H165 835 aa8.32□□□□□ -1.08
EPHA3-202ENST00000452448 EIF5BO60841 1220 aaKnown RBP8.31□□□□□ -1.08
EPHA3-202ENST00000452448 SCAF1Q9H7N4 1312 aaKnown RBP8.3□□□□□ -1.08
EPHA3-202ENST00000452448 SLC4A2P04920 1241 aa8.29□□□□□ -1.08
EPHA3-202ENST00000452448 TIMELESSQ9UNS1 1208 aa8.25□□□□□ -1.09
EPHA3-202ENST00000452448 ARXQ96QS3 562 aa8.23□□□□□ -1.09
EPHA3-202ENST00000452448 RNF216Q9NWF9 866 aaPredicted RBP8.22□□□□□ -1.09
EPHA3-202ENST00000452448 NISCHQ9Y2I1 1504 aa8.21□□□□□ -1.1
EPHA3-202ENST00000452448 FOXD4L1Q9NU39 408 aa8.2□□□□□ -1.1
EPHA3-202ENST00000452448 DMRT2Q9Y5R5 561 aa8.2□□□□□ -1.1
EPHA3-202ENST00000452448 FAM9AQ8IZU1 332 aaPredicted RBP8.17□□□□□ -1.1
EPHA3-202ENST00000452448 TAOK2Q9UL54 1235 aa8.17□□□□□ -1.1
EPHA3-202ENST00000452448 TULP1O00294 542 aaPredicted RBP8.13□□□□□ -1.11
EPHA3-202ENST00000452448 PLEKHG5O94827 1062 aa8.13□□□□□ -1.11
EPHA3-202ENST00000452448 HOXD11P31277 338 aaPredicted RBP8.13□□□□□ -1.11
EPHA3-202ENST00000452448 ATF5Q9Y2D1 282 aaPredicted RBP8.09□□□□□ -1.11
EPHA3-202ENST00000452448 DCAF8L1A6NGE4 600 aa8.06□□□□□ -1.12
EPHA3-202ENST00000452448 TPRNQ4KMQ1 711 aa8.05□□□□□ -1.12
EPHA3-202ENST00000452448 BCANQ96GW7 911 aa8.05□□□□□ -1.12
EPHA3-202ENST00000452448 RANGAP1P46060 587 aaPredicted RBP8.03□□□□□ -1.12
EPHA3-202ENST00000452448 KLHL34Q8N239 644 aa8.03□□□□□ -1.12
EPHA3-202ENST00000452448 HOMEZQ8IX15 550 aa7.99□□□□□ -1.13
EPHA3-202ENST00000452448 DNAJC5BQ9UF47 199 aa7.98□□□□□ -1.13
EPHA3-202ENST00000452448 PLCB2Q00722 1185 aa7.96□□□□□ -1.14
EPHA3-202ENST00000452448 PODXL2Q9NZ53 605 aa7.92□□□□□ -1.14
EPHA3-202ENST00000452448 HAP1P54257 671 aaPredicted RBP7.91□□□□□ -1.14
EPHA3-202ENST00000452448 FKBP8Q14318 412 aa7.89□□□□□ -1.15
EPHA3-202ENST00000452448 GTF3C3Q9Y5Q9 886 aa7.87□□□□□ -1.15
EPHA3-202ENST00000452448 U3KPZ7 1027 aaPredicted RBP7.86□□□□□ -1.15
EPHA3-202ENST00000452448 MYCNP04198 464 aaPredicted RBP7.85□□□□□ -1.15
EPHA3-202ENST00000452448 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.82□□□□□ -1.16
EPHA3-202ENST00000452448 UBE2Q2Q8WVN8 375 aa7.8□□□□□ -1.16
EPHA3-202ENST00000452448 CENPBP07199 599 aaPredicted RBP7.76□□□□□ -1.17
EPHA3-202ENST00000452448 PDIA4P13667 645 aaKnown RBP7.71□□□□□ -1.18
EPHA3-202ENST00000452448 SPINK5Q9NQ38 1064 aaPredicted RBP7.71□□□□□ -1.18
EPHA3-202ENST00000452448 TMEM132AQ24JP5 1023 aa7.69□□□□□ -1.18
EPHA3-202ENST00000452448 PKNOX2Q96KN3 472 aa7.68□□□□□ -1.18
EPHA3-202ENST00000452448 HRCP23327 699 aa7.68□□□□□ -1.18
EPHA3-202ENST00000452448 ABCC9O60706 1549 aa7.67□□□□□ -1.18
EPHA3-202ENST00000452448 NPM2Q86SE8 214 aaKnown RBP7.66□□□□□ -1.18
EPHA3-202ENST00000452448 VSIG10Q8N0Z9 540 aa7.66□□□□□ -1.18
EPHA3-202ENST00000452448 ATXN8OSP0DMR3 200 aa7.64□□□□□ -1.19
EPHA3-202ENST00000452448 C14orf37Q86TY3 774 aa7.64□□□□□ -1.19
EPHA3-202ENST00000452448 MKRN4PQ13434 485 aaPredicted RBP7.64□□□□□ -1.19
EPHA3-202ENST00000452448 KDM2AQ9Y2K7 1162 aa7.64□□□□□ -1.19
EPHA3-202ENST00000452448 ANO8Q9HCE9 1232 aaPredicted RBP7.63□□□□□ -1.19
EPHA3-202ENST00000452448 PDE4CQ08493 712 aa7.62□□□□□ -1.19
EPHA3-202ENST00000452448 ZNF219Q9P2Y4 722 aaPredicted RBP7.59□□□□□ -1.19
EPHA3-202ENST00000452448 TRHP20396 242 aaPredicted RBP7.58□□□□□ -1.2
EPHA3-202ENST00000452448 FBLN2P98095 1184 aa7.58□□□□□ -1.2
EPHA3-202ENST00000452448 NEFLP07196 543 aa7.58□□□□□ -1.2
EPHA3-202ENST00000452448 ANP32EQ9BTT0 268 aa7.57□□□□□ -1.2
EPHA3-202ENST00000452448 SUPT5HO00267 1087 aaKnown RBP7.55□□□□□ -1.2
EPHA3-202ENST00000452448 TRIM26Q12899 539 aaPredicted RBP7.55□□□□□ -1.2
EPHA3-202ENST00000452448 LOC105371045A0A1W2PR82 267 aa7.54□□□□□ -1.2
EPHA3-202ENST00000452448 ABCB7O75027 752 aa7.53□□□□□ -1.2
EPHA3-202ENST00000452448 DNAJC5Q9H3Z4 198 aa7.53□□□□□ -1.2
EPHA3-202ENST00000452448 DCAF8L2P0C7V8 631 aa7.52□□□□□ -1.21
EPHA3-202ENST00000452448 SAMD1Q6SPF0 538 aaPredicted RBP7.51□□□□□ -1.21
EPHA3-202ENST00000452448 POLA2Q14181 598 aa7.51□□□□□ -1.21
EPHA3-202ENST00000452448 CHMP4AQ9BY43 222 aa7.51□□□□□ -1.21
EPHA3-202ENST00000452448 BCL11BQ9C0K0 894 aaPredicted RBP7.49□□□□□ -1.21
EPHA3-202ENST00000452448 FBXO3Q9UK99 471 aa7.49□□□□□ -1.21
EPHA3-202ENST00000452448 CCDC180Q9P1Z9 1646 aa7.48□□□□□ -1.21
EPHA3-202ENST00000452448 UBTFP17480 764 aaKnown RBP7.47□□□□□ -1.21
EPHA3-202ENST00000452448 DHX37Q8IY37 1157 aaKnown RBP7.47□□□□□ -1.21
EPHA3-202ENST00000452448 TAF7LQ5H9L4 462 aa7.47□□□□□ -1.21
EPHA3-202ENST00000452448 CAPN15O75808 1086 aa7.46□□□□□ -1.22
EPHA3-202ENST00000452448 RNF39Q9H2S5 420 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms