RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.46	■□□□□ 0.71
USP44-208	ENST00000552440	CHIC1	Q5VXU3	224 aa		18.69	■□□□□ 0.58
USP44-208	ENST00000552440	SENP3	Q9H4L4	574 aa	Predicted RBP	16.82	■□□□□ 0.28
USP44-208	ENST00000552440	PHF23	Q9BUL5	403 aa	Predicted RBP	16.52	■□□□□ 0.23
USP44-208	ENST00000552440	FOXD1	Q16676	465 aa		15.52	■□□□□ 0.07
USP44-208	ENST00000552440	PLPPR3	Q6T4P5	718 aa		15.05	■□□□□ -0
USP44-208	ENST00000552440	MSH5	O43196	834 aa		14.68	□□□□□ -0.06
USP44-208	ENST00000552440	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.57	□□□□□ -0.08
USP44-208	ENST00000552440	PPP6R1	Q9UPN7	881 aa		14.48	□□□□□ -0.09
USP44-208	ENST00000552440	ADRA2B	P18089	450 aa		14.47	□□□□□ -0.09
USP44-208	ENST00000552440	POTED	Q86YR6	584 aa		14.04	□□□□□ -0.16
USP44-208	ENST00000552440	SCAF1	Q9H7N4	1312 aa	Known RBP	13.53	□□□□□ -0.24
USP44-208	ENST00000552440	DMRT2	Q9Y5R5	561 aa		13.29	□□□□□ -0.28
USP44-208	ENST00000552440	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.24	□□□□□ -0.29
USP44-208	ENST00000552440	PPP4R3CP	Q6ZMV5	832 aa		13.12	□□□□□ -0.31
USP44-208	ENST00000552440	CNKSR2	Q8WXI2	1034 aa		12.92	□□□□□ -0.34
USP44-208	ENST00000552440	HOXD11	P31277	338 aa	Predicted RBP	12.83	□□□□□ -0.35
USP44-208	ENST00000552440	NCBP3	Q53F19	620 aa	Known RBP	12.8	□□□□□ -0.36
USP44-208	ENST00000552440	RNF216	Q9NWF9	866 aa	Predicted RBP	12.79	□□□□□ -0.36
USP44-208	ENST00000552440	DCAF8L1	A6NGE4	600 aa		12.73	□□□□□ -0.37
USP44-208	ENST00000552440	DNAJC5B	Q9UF47	199 aa		12.53	□□□□□ -0.4
USP44-208	ENST00000552440	CACNB1	Q02641	598 aa	Predicted RBP	12.48	□□□□□ -0.41
USP44-208	ENST00000552440	RNF39	Q9H2S5	420 aa		12.43	□□□□□ -0.42
USP44-208	ENST00000552440	NPM3	O75607	178 aa	Known RBP	12.41	□□□□□ -0.42
USP44-208	ENST00000552440	C1QBP	Q07021	282 aa	Known RBP	12.36	□□□□□ -0.43
USP44-208	ENST00000552440	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.26	□□□□□ -0.45
USP44-208	ENST00000552440	KCNA4	P22459	653 aa		12.18	□□□□□ -0.46
USP44-208	ENST00000552440		U3KPZ7	1027 aa	Predicted RBP	11.9	□□□□□ -0.5
USP44-208	ENST00000552440	APLP2	Q06481	763 aa		11.88	□□□□□ -0.51
USP44-208	ENST00000552440	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.84	□□□□□ -0.51
USP44-208	ENST00000552440	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.84	□□□□□ -0.51
USP44-208	ENST00000552440	SLC4A2	P04920	1241 aa		11.79	□□□□□ -0.52
USP44-208	ENST00000552440	CAPN15	O75808	1086 aa		11.76	□□□□□ -0.53
USP44-208	ENST00000552440	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.72	□□□□□ -0.53
USP44-208	ENST00000552440	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.67	□□□□□ -0.54
USP44-208	ENST00000552440	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.66	□□□□□ -0.54
USP44-208	ENST00000552440	DSG3	P32926	999 aa		11.64	□□□□□ -0.55
USP44-208	ENST00000552440	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.62	□□□□□ -0.55
USP44-208	ENST00000552440	MYCN	P04198	464 aa	Predicted RBP	11.58	□□□□□ -0.56
USP44-208	ENST00000552440	TRH	P20396	242 aa	Predicted RBP	11.56	□□□□□ -0.56
USP44-208	ENST00000552440	FOXD4L1	Q9NU39	408 aa		11.47	□□□□□ -0.57
USP44-208	ENST00000552440	ABCB7	O75027	752 aa		11.39	□□□□□ -0.59
USP44-208	ENST00000552440	RBM42	Q9BTD8	480 aa	Known RBP	11.28	□□□□□ -0.6
USP44-208	ENST00000552440	POLA2	Q14181	598 aa		11.27	□□□□□ -0.61
USP44-208	ENST00000552440	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.23	□□□□□ -0.61
USP44-208	ENST00000552440	ATXN8OS	P0DMR3	200 aa		11.21	□□□□□ -0.62
USP44-208	ENST00000552440	ZBTB22	O15209	634 aa		11.12	□□□□□ -0.63
USP44-208	ENST00000552440	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.1	□□□□□ -0.63
USP44-208	ENST00000552440	POTEH	Q6S545	545 aa		11.07	□□□□□ -0.64
USP44-208	ENST00000552440	AKT1S1	Q96B36	256 aa		10.97	□□□□□ -0.65
USP44-208	ENST00000552440	FBLN2	P98095	1184 aa		10.93	□□□□□ -0.66
USP44-208	ENST00000552440	CHRDL2	Q6WN34	429 aa		10.88	□□□□□ -0.67
USP44-208	ENST00000552440	OSCAR	Q8IYS5	282 aa		10.86	□□□□□ -0.67
USP44-208	ENST00000552440	SPDYE2B	A6NHP3	402 aa		10.81	□□□□□ -0.68
USP44-208	ENST00000552440	SPDYE6	P0CI01	402 aa		10.81	□□□□□ -0.68
USP44-208	ENST00000552440	SPDYE2	Q495Y8	402 aa		10.81	□□□□□ -0.68
USP44-208	ENST00000552440	REM2	Q8IYK8	340 aa	Predicted RBP	10.79	□□□□□ -0.68
USP44-208	ENST00000552440	CSRNP3	Q8WYN3	585 aa		10.74	□□□□□ -0.69
USP44-208	ENST00000552440	ZNF692	Q9BU19	519 aa	Predicted RBP	10.65	□□□□□ -0.71
USP44-208	ENST00000552440	MKRN4P	Q13434	485 aa	Predicted RBP	10.63	□□□□□ -0.71
USP44-208	ENST00000552440	EHMT2	Q96KQ7	1210 aa		10.63	□□□□□ -0.71
USP44-208	ENST00000552440	PITPNM1	O00562	1244 aa		10.63	□□□□□ -0.71
USP44-208	ENST00000552440	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.61	□□□□□ -0.71
USP44-208	ENST00000552440	SSUH2	Q9Y2M2	353 aa		10.59	□□□□□ -0.71
USP44-208	ENST00000552440	PIP4P2	Q8N4L2	257 aa		10.58	□□□□□ -0.72
USP44-208	ENST00000552440	FXR2	P51116	673 aa	Known RBP eCLIP	10.57	□□□□□ -0.72
USP44-208	ENST00000552440	CLEC11A	Q9Y240	323 aa		10.5	□□□□□ -0.73
USP44-208	ENST00000552440	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
USP44-208	ENST00000552440	HAX1	O00165	279 aa		10.44	□□□□□ -0.74
USP44-208	ENST00000552440	SP7	Q8TDD2	431 aa	Predicted RBP	10.42	□□□□□ -0.74
USP44-208	ENST00000552440	PRR29	P0C7W0	189 aa		10.4	□□□□□ -0.74
USP44-208	ENST00000552440	PRKAR2A	P13861	404 aa	Known RBP	10.4	□□□□□ -0.75
USP44-208	ENST00000552440	STAG3	Q9UJ98	1225 aa		10.35	□□□□□ -0.75
USP44-208	ENST00000552440	SPDYE4	A6NLX3	237 aa		10.29	□□□□□ -0.76
USP44-208	ENST00000552440	C19orf67	A6NJJ6	358 aa		10.23	□□□□□ -0.77
USP44-208	ENST00000552440	CHADL	Q6NUI6	762 aa		10.2	□□□□□ -0.78
USP44-208	ENST00000552440	CLCN6	P51797	869 aa		10.17	□□□□□ -0.78
USP44-208	ENST00000552440	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.17	□□□□□ -0.78
USP44-208	ENST00000552440	EVX2	Q03828	476 aa		10.13	□□□□□ -0.79
USP44-208	ENST00000552440	CD44	P16070	742 aa	Known RBP	10.08	□□□□□ -0.8
USP44-208	ENST00000552440	CREBZF	Q9NS37	354 aa		10.06	□□□□□ -0.8
USP44-208	ENST00000552440	NPM1	P06748	294 aa	Known RBP eCLIP	10.05	□□□□□ -0.8
USP44-208	ENST00000552440	GABBR2	O75899	941 aa		10.04	□□□□□ -0.8
USP44-208	ENST00000552440	PROM2	Q8N271	834 aa		10.03	□□□□□ -0.8
USP44-208	ENST00000552440	PAK3	O75914	559 aa	Predicted RBP	10.02	□□□□□ -0.81
USP44-208	ENST00000552440	PLEKHG5	O94827	1062 aa		9.98	□□□□□ -0.81
USP44-208	ENST00000552440	ZNF579	Q8NAF0	562 aa	Known RBP	9.96	□□□□□ -0.82
USP44-208	ENST00000552440	ZRANB1	Q9UGI0	708 aa		9.96	□□□□□ -0.82
USP44-208	ENST00000552440	DCBLD2	Q96PD2	775 aa		9.88	□□□□□ -0.83
USP44-208	ENST00000552440	MNX1	P50219	401 aa	Predicted RBP	9.86	□□□□□ -0.83
USP44-208	ENST00000552440	MIER1	Q8N108	512 aa		9.84	□□□□□ -0.83
USP44-208	ENST00000552440	ZBTB47	Q9UFB7	747 aa	Predicted RBP	9.84	□□□□□ -0.83
USP44-208	ENST00000552440	FKBP8	Q14318	412 aa		9.79	□□□□□ -0.84
USP44-208	ENST00000552440	PLCD3	Q8N3E9	789 aa		9.79	□□□□□ -0.84
USP44-208	ENST00000552440	LHX8	Q68G74	356 aa		9.78	□□□□□ -0.84
USP44-208	ENST00000552440	FBXO3	Q9UK99	471 aa		9.76	□□□□□ -0.85
USP44-208	ENST00000552440	POTEI	P0CG38	1075 aa		9.73	□□□□□ -0.85
USP44-208	ENST00000552440	PHF12	Q96QT6	1004 aa		9.73	□□□□□ -0.85
USP44-208	ENST00000552440	GALR2	O43603	387 aa	Predicted RBP	9.72	□□□□□ -0.85
USP44-208	ENST00000552440	TSPYL2	Q9H2G4	693 aa	Predicted RBP	9.71	□□□□□ -0.85

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms