Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 TSPY17P-201ENST00000450329 467 ntBASIC19.2■□□□□ 0.66
DKK3Q9UBP4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 Z82202.1-201ENST00000623446 1880 ntBASIC19.2■□□□□ 0.66
DKK3Q9UBP4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 AC092338.2-201ENST00000568827 1415 ntBASIC19.19■□□□□ 0.66
DKK3Q9UBP4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 FAM210CP-201ENST00000445714 574 ntBASIC19.19■□□□□ 0.66
DKK3Q9UBP4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 AC010653.2-201ENST00000623505 997 ntBASIC19.19■□□□□ 0.66
DKK3Q9UBP4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DKK3Q9UBP4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 AC113347.1-201ENST00000413321 391 ntBASIC19.18■□□□□ 0.66
DKK3Q9UBP4 AL353719.1-201ENST00000566847 864 ntBASIC19.18■□□□□ 0.66
DKK3Q9UBP4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.18■□□□□ 0.66
DKK3Q9UBP4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.17■□□□□ 0.66
DKK3Q9UBP4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 AC007663.1-201ENST00000438948 1240 ntBASIC19.17■□□□□ 0.66
DKK3Q9UBP4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 SLC25A3P1-201ENST00000443844 931 ntBASIC19.17■□□□□ 0.66
DKK3Q9UBP4 ECEL1P2-202ENST00000465689 757 ntBASIC19.17■□□□□ 0.66
DKK3Q9UBP4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 FAM87A-204ENST00000613235 858 ntBASIC19.17■□□□□ 0.66
DKK3Q9UBP4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DKK3Q9UBP4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.16■□□□□ 0.66
DKK3Q9UBP4 INGX-201ENST00000359239 846 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms