Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 AL359736.2-201ENST00000621992 437 ntBASIC20.53■□□□□ 0.88
SIX2Q9NPC8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 AC083906.6-201ENST00000641366 219 ntBASIC20.53■□□□□ 0.88
SIX2Q9NPC8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
SIX2Q9NPC8 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.52■□□□□ 0.88
SIX2Q9NPC8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.52■□□□□ 0.88
SIX2Q9NPC8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX2Q9NPC8 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SIX2Q9NPC8 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX2Q9NPC8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 Z98044.1-201ENST00000632503 1764 ntBASIC20.51■□□□□ 0.87
SIX2Q9NPC8 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 ITM2C-210ENST00000620962 501 ntBASIC20.51■□□□□ 0.87
SIX2Q9NPC8 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX2Q9NPC8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 KSR1P1-201ENST00000446298 240 ntBASIC20.5■□□□□ 0.87
SIX2Q9NPC8 AC091390.4-202ENST00000476426 537 ntBASIC20.5■□□□□ 0.87
SIX2Q9NPC8 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 AC131212.4-201ENST00000623606 975 ntBASIC20.5■□□□□ 0.87
SIX2Q9NPC8 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.5■□□□□ 0.87
SIX2Q9NPC8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 PRORSD1P-201ENST00000295112 541 ntBASIC20.49■□□□□ 0.87
SIX2Q9NPC8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 AC008040.2-201ENST00000461049 708 ntBASIC20.49■□□□□ 0.87
SIX2Q9NPC8 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SIX2Q9NPC8 AP002982.1-201ENST00000492365 877 ntBASIC20.49■□□□□ 0.87
SIX2Q9NPC8 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms