Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 AL353807.1-201ENST00000427475 662 ntBASIC18.28■□□□□ 0.52
VMP1Q96GC9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 AP001412.1-201ENST00000608405 714 ntBASIC18.28■□□□□ 0.52
VMP1Q96GC9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.28■□□□□ 0.52
VMP1Q96GC9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VMP1Q96GC9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
VMP1Q96GC9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 RPS2P55-201ENST00000397318 883 ntBASIC18.27■□□□□ 0.52
VMP1Q96GC9 AC107956.1-201ENST00000494359 873 ntBASIC18.27■□□□□ 0.52
VMP1Q96GC9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 AC233702.5-201ENST00000584107 538 ntBASIC18.27■□□□□ 0.52
VMP1Q96GC9 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.27■□□□□ 0.52
VMP1Q96GC9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VMP1Q96GC9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VMP1Q96GC9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VMP1Q96GC9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
VMP1Q96GC9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VMP1Q96GC9 AC020916.1-201ENST00000587762 1774 ntBASIC18.27■□□□□ 0.51
VMP1Q96GC9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VMP1Q96GC9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.27■□□□□ 0.51
VMP1Q96GC9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VMP1Q96GC9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
VMP1Q96GC9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
VMP1Q96GC9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 HTR7P1-201ENST00000538670 1336 ntBASIC18.26■□□□□ 0.51
VMP1Q96GC9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.26■□□□□ 0.51
VMP1Q96GC9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 Z99916.2-201ENST00000604037 246 ntBASIC18.26■□□□□ 0.51
VMP1Q96GC9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 AL691432.2-201ENST00000607222 2038 ntBASIC18.26■□□□□ 0.51
VMP1Q96GC9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VMP1Q96GC9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms