Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT39Q6A163 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
KRT39Q6A163 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT39Q6A163 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
KRT39Q6A163 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
KRT39Q6A163 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
KRT39Q6A163 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
KRT39Q6A163 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.65■□□□□ 0.9
KRT39Q6A163 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
KRT39Q6A163 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.65■□□□□ 0.9
KRT39Q6A163 AC008550.1-201ENST00000511500 884 ntBASIC20.65■□□□□ 0.9
KRT39Q6A163 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.65■□□□□ 0.9
KRT39Q6A163 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
KRT39Q6A163 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.65■□□□□ 0.9
KRT39Q6A163 MIR6786-201ENST00000616843 113 ntBASIC20.65■□□□□ 0.9
KRT39Q6A163 AC011298.2-201ENST00000617989 482 ntBASIC20.65■□□□□ 0.9
KRT39Q6A163 AC130371.2-201ENST00000619443 611 ntBASIC20.65■□□□□ 0.9
KRT39Q6A163 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.65■□□□□ 0.9
KRT39Q6A163 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT39Q6A163 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
KRT39Q6A163 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
KRT39Q6A163 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
KRT39Q6A163 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
KRT39Q6A163 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.64■□□□□ 0.9
KRT39Q6A163 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT39Q6A163 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.89
KRT39Q6A163 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT39Q6A163 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.64■□□□□ 0.89
KRT39Q6A163 B3GAT3P1-201ENST00000471720 806 ntBASIC20.64■□□□□ 0.89
KRT39Q6A163 AC011506.1-201ENST00000474329 610 ntBASIC20.64■□□□□ 0.89
KRT39Q6A163 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.64■□□□□ 0.89
KRT39Q6A163 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT39Q6A163 AP006294.2-201ENST00000641667 209 ntBASIC20.64■□□□□ 0.89
KRT39Q6A163 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
KRT39Q6A163 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT39Q6A163 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
KRT39Q6A163 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
KRT39Q6A163 FSCN1P1-201ENST00000568912 1481 ntBASIC20.63■□□□□ 0.89
KRT39Q6A163 KRT8P11-201ENST00000409686 1436 ntBASIC20.63■□□□□ 0.89
KRT39Q6A163 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT39Q6A163 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.63■□□□□ 0.89
KRT39Q6A163 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT39Q6A163 MIR718-201ENST00000390190 70 ntBASIC20.63■□□□□ 0.89
KRT39Q6A163 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.63■□□□□ 0.89
KRT39Q6A163 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT39Q6A163 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT39Q6A163 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT39Q6A163 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.63■□□□□ 0.89
KRT39Q6A163 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.63■□□□□ 0.89
KRT39Q6A163 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT39Q6A163 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.62■□□□□ 0.89
KRT39Q6A163 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
KRT39Q6A163 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 MESTP1-201ENST00000404287 994 ntBASIC20.62■□□□□ 0.89
KRT39Q6A163 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms