Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC144BQ3MJ40 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
CCDC144BQ3MJ40 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.19■■□□□ 1.14
CCDC144BQ3MJ40 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CCDC144BQ3MJ40 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 TSPY14P-201ENST00000303979 915 ntBASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 CRYGFP-201ENST00000418459 633 ntBASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
CCDC144BQ3MJ40 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 LIN28AP1-201ENST00000429574 405 ntBASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 NTF6B-201ENST00000591913 560 ntBASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CCDC144BQ3MJ40 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 PHGDH-210ENST00000641115 1638 ntBASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 BX119927.1-201ENST00000636596 1552 ntBASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC144BQ3MJ40 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC22.15■■□□□ 1.14
CCDC144BQ3MJ40 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC144BQ3MJ40 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.14■■□□□ 1.14
CCDC144BQ3MJ40 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC22.14■■□□□ 1.14
CCDC144BQ3MJ40 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
CCDC144BQ3MJ40 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC144BQ3MJ40 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 INGX-201ENST00000359239 846 ntBASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 ATP5G1P1-201ENST00000448724 379 ntBASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 FDX2-206ENST00000492239 773 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC144BQ3MJ40 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms