Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SRP54P61011 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SRP54P61011 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.84■□□□□ 0.61
SRP54P61011 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 BX664615.1-201ENST00000443558 458 ntBASIC18.84■□□□□ 0.61
SRP54P61011 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.84■□□□□ 0.61
SRP54P61011 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.84■□□□□ 0.61
SRP54P61011 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.84■□□□□ 0.61
SRP54P61011 AC006011.2-201ENST00000621313 1158 ntBASIC18.84■□□□□ 0.61
SRP54P61011 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SRP54P61011 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SRP54P61011 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SRP54P61011 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SRP54P61011 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SRP54P61011 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SRP54P61011 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.83■□□□□ 0.61
SRP54P61011 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SRP54P61011 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SRP54P61011 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SRP54P61011 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.83■□□□□ 0.61
SRP54P61011 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.83■□□□□ 0.6
SRP54P61011 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.83■□□□□ 0.6
SRP54P61011 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.83■□□□□ 0.6
SRP54P61011 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SRP54P61011 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SRP54P61011 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
SRP54P61011 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.82■□□□□ 0.6
SRP54P61011 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SRP54P61011 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.82■□□□□ 0.6
SRP54P61011 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.82■□□□□ 0.6
SRP54P61011 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SRP54P61011 AL138966.2-201ENST00000621997 464 ntBASIC18.82■□□□□ 0.6
SRP54P61011 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.82■□□□□ 0.6
SRP54P61011 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.82■□□□□ 0.6
SRP54P61011 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SRP54P61011 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SRP54P61011 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SRP54P61011 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SRP54P61011 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.81■□□□□ 0.6
SRP54P61011 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
SRP54P61011 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.81■□□□□ 0.6
SRP54P61011 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
SRP54P61011 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.81■□□□□ 0.6
SRP54P61011 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.81■□□□□ 0.6
SRP54P61011 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.81■□□□□ 0.6
SRP54P61011 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SRP54P61011 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SRP54P61011 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.81■□□□□ 0.6
SRP54P61011 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SRP54P61011 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SRP54P61011 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms