Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN4P29074 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 AC090164.3-201ENST00000610780 2143 ntBASIC19.16■□□□□ 0.66
PTPN4P29074 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PTPN4P29074 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN4P29074 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PTPN4P29074 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
PTPN4P29074 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN4P29074 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN4P29074 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN4P29074 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN4P29074 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PTPN4P29074 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
PTPN4P29074 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN4P29074 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN4P29074 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN4P29074 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN4P29074 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN4P29074 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PTPN4P29074 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN4P29074 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN4P29074 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.15■□□□□ 0.66
PTPN4P29074 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN4P29074 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN4P29074 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PTPN4P29074 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN4P29074 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 NOC2LP2-201ENST00000407594 1944 ntBASIC19.15■□□□□ 0.66
PTPN4P29074 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN4P29074 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN4P29074 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PTPN4P29074 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PTPN4P29074 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PTPN4P29074 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.14■□□□□ 0.66
PTPN4P29074 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.14■□□□□ 0.65
PTPN4P29074 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 AC006333.2-201ENST00000607957 2099 ntBASIC19.14■□□□□ 0.65
PTPN4P29074 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 AL356652.1-201ENST00000615962 565 ntBASIC19.14■□□□□ 0.65
PTPN4P29074 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.14■□□□□ 0.65
PTPN4P29074 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN4P29074 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.13■□□□□ 0.65
PTPN4P29074 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms