Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
BDNFP23560 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
BDNFP23560 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
BDNFP23560 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
BDNFP23560 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.16■□□□□ 0.82
BDNFP23560 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.16■□□□□ 0.82
BDNFP23560 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
BDNFP23560 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.16■□□□□ 0.82
BDNFP23560 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.16■□□□□ 0.82
BDNFP23560 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
BDNFP23560 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 AC073508.3-201ENST00000619697 1419 ntBASIC20.16■□□□□ 0.82
BDNFP23560 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.16■□□□□ 0.82
BDNFP23560 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BDNFP23560 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
BDNFP23560 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.15■□□□□ 0.82
BDNFP23560 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.15■□□□□ 0.82
BDNFP23560 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.15■□□□□ 0.82
BDNFP23560 LIN28AP1-201ENST00000429574 405 ntBASIC20.15■□□□□ 0.82
BDNFP23560 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
BDNFP23560 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.15■□□□□ 0.82
BDNFP23560 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.15■□□□□ 0.82
BDNFP23560 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.15■□□□□ 0.82
BDNFP23560 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BDNFP23560 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.15■□□□□ 0.82
BDNFP23560 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
BDNFP23560 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
BDNFP23560 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
BDNFP23560 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.14■□□□□ 0.81
BDNFP23560 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 MIR1224-201ENST00000408193 85 ntBASIC20.14■□□□□ 0.81
BDNFP23560 HMGA1P5-201ENST00000412453 271 ntBASIC20.14■□□□□ 0.81
BDNFP23560 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
BDNFP23560 ATP5G1P1-201ENST00000448724 379 ntBASIC20.14■□□□□ 0.81
BDNFP23560 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.14■□□□□ 0.81
BDNFP23560 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.14■□□□□ 0.81
BDNFP23560 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.14■□□□□ 0.81
BDNFP23560 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.14■□□□□ 0.81
BDNFP23560 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
BDNFP23560 AC010653.2-201ENST00000623505 997 ntBASIC20.14■□□□□ 0.81
BDNFP23560 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.14■□□□□ 0.81
BDNFP23560 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BDNFP23560 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
BDNFP23560 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
BDNFP23560 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.13■□□□□ 0.81
BDNFP23560 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.13■□□□□ 0.81
BDNFP23560 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.13■□□□□ 0.81
BDNFP23560 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.13■□□□□ 0.81
BDNFP23560 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BDNFP23560 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BDNFP23560 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BDNFP23560 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BDNFP23560 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
BDNFP23560 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.13■□□□□ 0.81
BDNFP23560 AP003041.3-201ENST00000527151 707 ntBASIC20.13■□□□□ 0.81
BDNFP23560 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.13■□□□□ 0.81
BDNFP23560 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BDNFP23560 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
BDNFP23560 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.13■□□□□ 0.81
BDNFP23560 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BDNFP23560 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.13■□□□□ 0.81
BDNFP23560 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.13■□□□□ 0.81
BDNFP23560 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
BDNFP23560 AC007952.6-201ENST00000573168 2673 ntBASIC20.12■□□□□ 0.81
BDNFP23560 AC003957.1-201ENST00000625108 2673 ntBASIC20.12■□□□□ 0.81
BDNFP23560 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
BDNFP23560 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
BDNFP23560 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.12■□□□□ 0.81
BDNFP23560 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.12■□□□□ 0.81
BDNFP23560 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.12■□□□□ 0.81
BDNFP23560 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.12■□□□□ 0.81
BDNFP23560 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms