Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.54■■□□□ 1.2
HLA-DOAP06340 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 AL031133.1-201ENST00000406807 723 ntBASIC22.53■■□□□ 1.2
HLA-DOAP06340 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 NT5C-210ENST00000582160 860 ntTSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HLA-DOAP06340 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
HLA-DOAP06340 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 GOLGA6L5P-202ENST00000515341 1828 ntBASIC22.52■■□□□ 1.2
HLA-DOAP06340 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC22.52■■□□□ 1.2
HLA-DOAP06340 CLN6-204ENST00000564752 900 ntTSL 3 BASIC22.52■■□□□ 1.2
HLA-DOAP06340 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC22.52■■□□□ 1.2
HLA-DOAP06340 AC008622.2-201ENST00000617006 1229 ntBASIC22.52■■□□□ 1.2
HLA-DOAP06340 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 PWWP2AP1-201ENST00000429776 2273 ntBASIC22.52■■□□□ 1.2
HLA-DOAP06340 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.52■■□□□ 1.2
HLA-DOAP06340 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
HLA-DOAP06340 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC22.52■■□□□ 1.2
HLA-DOAP06340 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 AL359075.1-203ENST00000462729 1002 ntBASIC22.51■■□□□ 1.19
HLA-DOAP06340 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 ETFA-216ENST00000560726 942 ntTSL 3 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 AC091076.1-201ENST00000610741 619 ntBASIC22.51■■□□□ 1.19
HLA-DOAP06340 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.51■■□□□ 1.19
HLA-DOAP06340 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HLA-DOAP06340 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 TREX1-205ENST00000625293 1783 ntBASIC22.5■■□□□ 1.19
HLA-DOAP06340 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms