Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SHOX2O60902 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHOX2O60902 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SHOX2O60902 SDHAP1-207ENST00000440850 2000 ntBASIC19.17■□□□□ 0.66
SHOX2O60902 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.17■□□□□ 0.66
SHOX2O60902 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SHOX2O60902 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.16■□□□□ 0.66
SHOX2O60902 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SHOX2O60902 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SHOX2O60902 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SHOX2O60902 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SHOX2O60902 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SHOX2O60902 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SHOX2O60902 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.16■□□□□ 0.66
SHOX2O60902 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.16■□□□□ 0.66
SHOX2O60902 TPRG1LP1-201ENST00000598702 760 ntBASIC19.16■□□□□ 0.66
SHOX2O60902 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.16■□□□□ 0.66
SHOX2O60902 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.16■□□□□ 0.66
SHOX2O60902 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHOX2O60902 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.15■□□□□ 0.66
SHOX2O60902 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SHOX2O60902 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.15■□□□□ 0.66
SHOX2O60902 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.15■□□□□ 0.66
SHOX2O60902 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.15■□□□□ 0.66
SHOX2O60902 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.15■□□□□ 0.66
SHOX2O60902 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.15■□□□□ 0.66
SHOX2O60902 AF213884.3-201ENST00000563833 479 ntBASIC19.15■□□□□ 0.66
SHOX2O60902 AC106739.1-201ENST00000617035 715 ntBASIC19.15■□□□□ 0.66
SHOX2O60902 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SHOX2O60902 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.15■□□□□ 0.66
SHOX2O60902 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.15■□□□□ 0.66
SHOX2O60902 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHOX2O60902 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.15■□□□□ 0.66
SHOX2O60902 FEM1AP3-201ENST00000403722 1741 ntBASIC19.14■□□□□ 0.66
SHOX2O60902 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SHOX2O60902 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHOX2O60902 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.14■□□□□ 0.65
SHOX2O60902 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SHOX2O60902 MIR572-201ENST00000384983 95 ntBASIC19.14■□□□□ 0.65
SHOX2O60902 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.14■□□□□ 0.65
SHOX2O60902 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SHOX2O60902 AC046158.3-201ENST00000624947 2558 ntBASIC19.14■□□□□ 0.65
SHOX2O60902 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
SHOX2O60902 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.14■□□□□ 0.65
SHOX2O60902 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.14■□□□□ 0.65
SHOX2O60902 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHOX2O60902 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SHOX2O60902 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.13■□□□□ 0.65
SHOX2O60902 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.13■□□□□ 0.65
SHOX2O60902 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.13■□□□□ 0.65
SHOX2O60902 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SHOX2O60902 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.13■□□□□ 0.65
SHOX2O60902 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.13■□□□□ 0.65
SHOX2O60902 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.13■□□□□ 0.65
SHOX2O60902 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms