Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LMX1BO60663 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1BO60663 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.8■□□□□ 0.28
LMX1BO60663 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.8■□□□□ 0.28
LMX1BO60663 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1BO60663 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.8■□□□□ 0.28
LMX1BO60663 MIR4785-201ENST00000585005 73 ntBASIC16.8■□□□□ 0.28
LMX1BO60663 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LMX1BO60663 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
LMX1BO60663 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1BO60663 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1BO60663 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1BO60663 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1BO60663 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
LMX1BO60663 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LMX1BO60663 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1BO60663 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
LMX1BO60663 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1BO60663 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.79■□□□□ 0.28
LMX1BO60663 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.79■□□□□ 0.28
LMX1BO60663 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 AC133561.5-201ENST00000635547 218 ntBASIC16.79■□□□□ 0.28
LMX1BO60663 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1BO60663 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1BO60663 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1BO60663 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LMX1BO60663 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1BO60663 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.78■□□□□ 0.28
LMX1BO60663 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.78■□□□□ 0.28
LMX1BO60663 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1BO60663 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1BO60663 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.78■□□□□ 0.28
LMX1BO60663 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.78■□□□□ 0.28
LMX1BO60663 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1BO60663 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LMX1BO60663 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
LMX1BO60663 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 AC104581.1-202ENST00000635932 2618 ntBASIC16.78■□□□□ 0.28
LMX1BO60663 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
LMX1BO60663 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LMX1BO60663 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
LMX1BO60663 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1BO60663 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
LMX1BO60663 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.77■□□□□ 0.28
LMX1BO60663 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 AL138781.2-201ENST00000617896 1843 ntBASIC16.77■□□□□ 0.28
LMX1BO60663 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1BO60663 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms