Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LRRC53A6NM62 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LRRC53A6NM62 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.61■□□□□ 0.89
LRRC53A6NM62 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 AC092666.2-201ENST00000613287 246 ntBASIC20.61■□□□□ 0.89
LRRC53A6NM62 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC53A6NM62 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 AC005082.1-201ENST00000413042 2259 ntBASIC20.6■□□□□ 0.89
LRRC53A6NM62 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 UNC93B5-201ENST00000530315 699 ntBASIC20.6■□□□□ 0.89
LRRC53A6NM62 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC53A6NM62 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC53A6NM62 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
LRRC53A6NM62 AC008403.3-201ENST00000598924 454 ntBASIC20.59■□□□□ 0.89
LRRC53A6NM62 HLA-A-209ENST00000638375 975 ntBASIC20.59■□□□□ 0.89
LRRC53A6NM62 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC53A6NM62 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC53A6NM62 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC53A6NM62 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.58■□□□□ 0.89
LRRC53A6NM62 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC53A6NM62 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC53A6NM62 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC53A6NM62 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 AC090192.1-201ENST00000517740 490 ntBASIC20.58■□□□□ 0.89
LRRC53A6NM62 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 PRKY-204ENST00000533551 1019 ntBASIC20.58■□□□□ 0.89
LRRC53A6NM62 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.58■□□□□ 0.89
LRRC53A6NM62 AC090164.3-201ENST00000610780 2143 ntBASIC20.58■□□□□ 0.89
LRRC53A6NM62 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC53A6NM62 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC53A6NM62 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC53A6NM62 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC53A6NM62 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.58■□□□□ 0.88
LRRC53A6NM62 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
LRRC53A6NM62 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC53A6NM62 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.58■□□□□ 0.88
LRRC53A6NM62 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC53A6NM62 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 NBPF21P-201ENST00000425093 1451 ntBASIC20.57■□□□□ 0.88
LRRC53A6NM62 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms